Sequence Similarity Clusters for the Entities in PDB 1FZI

Entity #1 | Chains: A,B
METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 24 24 769
95 % 27 27 898 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 27 27 932
70 % 29 29 941
50 % 29 29 980
40 % 29 29 1007
30 % 29 29 984
Entity #2 | Chains: C,D
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 776
95 % 27 27 906 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 27 27 940
70 % 27 27 971
50 % 29 29 985
40 % 29 29 1010
30 % 29 29 987
Entity #3 | Chains: E,F
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 25 730
95 % 27 27 923 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 27 27 954
70 % 27 27 981
50 % 29 29 993
40 % 29 29 1020
30 % 29 29 996

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.