Sequence Similarity Clusters for the Entities in PDB 1FZ5

Entity #1 | Chains: A,B
METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 25 857
95 % 23 27 989 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 23 27 1012
70 % 25 29 1020
50 % 25 29 1070
40 % 25 29 1078
30 % 25 29 1068
Entity #2 | Chains: C,D
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 23 974
95 % 23 27 990 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 23 27 1013
70 % 23 27 1052
50 % 25 29 1071
40 % 25 29 1079
30 % 25 29 1069
Entity #3 | Chains: E,F
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 25 873
95 % 23 27 991 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 23 27 1014
70 % 23 27 1053
50 % 25 29 1072
40 % 25 29 1080
30 % 25 29 1070

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XVB 1 A, B Methane monooxygenase component A alpha chain 414 1.14.13.25 | Details
2 1XVG 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
3 1XU5 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
4 1FZ1 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
5 1XVF 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
6 1FZ3 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
7 1FZ7 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
8 1XVC 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
9 1FZ0 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
10 1FYZ 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
11 1FZ8 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
12 1FZ2 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
13 1FZ6 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
14 1XMG 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
15 1XVD 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
16 1XMH 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
17 1XU3 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
18 1FZ9 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
19 1XVE 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
20 1XMF 1 A, B Methane monooxygenase component A alpha chain alpha subunit 414 1.14.13.25 | Details
21 1FZ5 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
22 1FZ4 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
23 1FZH 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details
24 4GAM 2 A, F, K, P Methane monooxygenase component A alpha chain 414 1.14.13.25 | Details
25 1FZI 1 A, B METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN 414 1.14.13.25 | Details