Sequence Similarity Clusters for the Entities in PDB 1FYZ

Entity #1 | Chains: A,B
METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 24 765
95 % 12 27 889 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 12 27 926
70 % 13 29 929
50 % 13 29 977
40 % 13 29 1005
30 % 13 29 979
Entity #2 | Chains: C,D
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 23 772
95 % 12 27 897 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 12 27 934
70 % 12 27 968
50 % 13 29 982
40 % 13 29 1008
30 % 13 29 982
Entity #3 | Chains: E,F
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 25 727
95 % 12 27 915 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 12 27 947
70 % 12 27 978
50 % 13 29 991
40 % 13 29 1018
30 % 13 29 992

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.