Sequence Similarity Clusters for the Entities in PDB 1FYZ

Entity #1 | Chains: A,B
METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN protein, length: 527 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 24 777
95 % 12 27 914
90 % 12 27 948
70 % 13 29 952
50 % 13 29 990
40 % 13 29 1014
30 % 13 29 991
Entity #2 | Chains: C,D
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN protein, length: 389 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 784
95 % 12 27 921
90 % 12 27 955
70 % 12 27 985
50 % 13 29 995
40 % 13 29 1017
30 % 13 29 994
Entity #3 | Chains: E,F
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 25 737
95 % 12 27 936
90 % 12 27 968
70 % 12 27 997
50 % 13 29 1006
40 % 13 29 1028
30 % 13 29 1003

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures