Sequence Similarity Clusters for the Entities in PDB 1FYT

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 91 235
95 % 71 98 275 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 79 115 235
70 % 79 115 258
50 % 112 173 187
40 % 112 173 200
30 % 230 359 102
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 40 668
95 % 32 43 748 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 70 94 305
70 % 113 172 157
50 % 113 174 185
40 % 113 174 198
30 % 231 359 102
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41173
95 % 19 20 3295 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 20 3385
70 % 203 363 42
50 % 203 364 83
40 % 203 364 100
30 % 4718 7871 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 48983
95 % 7 8 10341 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 14 4537
70 % 211 375 38
50 % 211 376 77
40 % 211 376 92
30 % 4719 7871 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6AT6 1 B T-cell receptor beta variable 28, Human nkt tcr beta chain chimera 9606
2 5D7K 2 E MAV36 TCR Beta Chain 9606
3 6AVF 3 B T-cell receptor beta variable 28,TCR beta chain 9606
4 4ZDH 2 B Beta chain of JKF6 T-cell receptor,Protein TRBV28 9606
5 6FR7 2 B T-cell Rceceptor beta Chain 9606
6 1J8H 5 E T-CELL RECEPTOR BETA CHAIN Extracellular Domain 9606
7 6FR8 2 B T-Cell Receptor HA1.7 beta Chain 9606
8 6EH8 2 B Human T Cell Receptor Beta Chain 9606
9 4GKZ 2 B Beta Chain of Class II TCR 9606
10 6EH9 2 B Human T Cell Receptor Beta Chain 9606
11 1FYT 5 E T-CELL RECEPTOR BETA CHAIN EXTRACELLULAR DOMAIN 9606
12 6FR6 2 B Human T-cell Receptor Beta Chain 9606
13 4EUP 5 H, J JKF6 beta chain 9606
14 5D7L 4 E, H MAV36 TCR Beta Chain 9606