Sequence Similarity Clusters for the Entities in PDB 1FYT

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 91 226
95 % 71 98 267 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 79 115 231
70 % 79 115 248
50 % 110 171 180
40 % 110 171 193
30 % 226 355 98
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 40 636
95 % 32 43 707 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 70 94 296
70 % 111 170 154
50 % 111 172 179
40 % 111 172 192
30 % 227 355 98
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39721
95 % 19 20 3161 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 20 3240
70 % 190 346 31
50 % 190 347 79
40 % 190 347 100
30 % 4528 7460 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47281
95 % 7 8 9909 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 14 4356
70 % 198 356 26
50 % 198 359 72
40 % 198 359 93
30 % 4529 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J8H 5 E T-CELL RECEPTOR BETA CHAIN Extracellular Domain 9606
2 1FYT 5 E T-CELL RECEPTOR BETA CHAIN EXTRACELLULAR DOMAIN 9606