Sequence Similarity Clusters for the Entities in PDB 1FYT

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 91 226
95 % 71 98 267 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 79 115 231
70 % 79 115 248
50 % 110 171 180
40 % 110 171 193
30 % 226 355 98
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 40 636
95 % 32 43 707 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 70 94 296
70 % 111 170 154
50 % 111 172 179
40 % 111 172 192
30 % 227 355 98
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39721
95 % 19 20 3161 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 20 3240
70 % 190 346 31
50 % 190 347 79
40 % 190 347 100
30 % 4528 7460 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47281
95 % 7 8 9909 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 14 4356
70 % 198 356 26
50 % 198 359 72
40 % 198 359 93
30 % 4529 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4X5W 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular, UNP residues 30-227 9606
2 3PDO 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain extracellular domain 9606
3 1KLU 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
4 2G9H 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
5 4AEN 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DRB1-1 BETA CHAIN EXTRACELLULAR DOMAIN, RESIDUES 30-227 9606
6 3L6F 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
7 1PYW 2 B HLA class II histocompatibility antigen, DR-1 beta chain Extracellular domain of HLA-DRB1 9606
8 4OV5 2 B, E, H, K, N, Q HLA class II histocompatibility antigen, DRB1-1 beta chain Secreted extracellular domain (UNP residues 30-219) 9606
9 3QXD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
10 3S5L 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain MHC class II b chain 9606
11 1JWU 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
12 1SJH 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain of HLA-DRB*0101 9606
13 1SJE 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracelluar domain of HLA-DRB*0101 9606
14 1KLG 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN residues 30-219 9606
15 2XN9 5 E MAJOR HISTOCOMPATIBILITY COMPLEX CLASS II BETA CHAIN CHAIN DRB1 0101 EXTRACELLULAR DOMAIN, RESIDUES 30-219 9606
16 2IPK 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain, residues 30-219 9606
17 1AQD 2 B, E, H, K HLA-DR1 CLASS II HISTOCOMPATIBILITY PROTEIN SECRETED EXTRACELLULAR DOMAINS 9606
18 1T5X 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
19 1JWS 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
20 1T5W 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain Extracellular domain 9606
21 4E41 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain unp residues 30-219 9606
22 1HXY 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN 9606
23 1JWM 2 B HLA class II histocompatibility antigen, DR-1 beta chain 9606
24 3PGC 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
25 3QXA 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-219 9606
26 2ICW 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain residues 30-219 9606
27 3PGD 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-227 9606
28 3S4S 2 B, E HLA class II histocompatibility antigen, DRB1-1 beta chain UNP residues 30-221 9606
29 6CQJ 2 B, E, H HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
30 1FYT 2 B HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN EXTRACELLULAR DOMAIN 9606
31 1KG0 2 B MHC class II Receptor HLA-DR1 BETA CHAIN, EXTRACELLULAR DOMAIN 9606
32 1DLH 2 B, E CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) 9606
33 2IAM 2 B HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
34 1R5I 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain beta chain of class II MHC (residues 30-219) 9606
35 2IAN 2 B, G, L, Q HLA class II histocompatibility antigen, DRB1-1 beta chain residues 1-190 (30-219) 9606
36 2OJE 2 B, F HLA class II histocompatibility antigen, DRB1-1 beta chain precursor extracellular domain, residues 30-219 9606
37 1SEB 2 B, F HLA CLASS II HISTOCOMPATIBILITY ANTIGEN EXTRACELLULAR DOMAIN 9606
38 4C56 5 E, K MHC CLASS II ANTIGEN IMMUNOGLOBULIN DOMAIN 9606
39 6CQR 2 B, G HLA class II histocompatibility antigen, DRB1-1 beta chain 9606
40 1LO5 2 B HLA class II histocompatibility antigen, DR-1 beta chain extracellular domain 9606