Sequence Similarity Clusters for the Entities in PDB 1FYT

Entity #1 | Chains: A
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 91 235
95 % 71 98 275 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 79 115 235
70 % 79 115 258
50 % 112 173 187
40 % 112 173 200
30 % 230 359 102
Entity #2 | Chains: B
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-1 BETA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 40 668
95 % 32 43 748 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 70 94 305
70 % 113 172 157
50 % 113 174 185
40 % 113 174 198
30 % 231 359 102
Entity #3 | Chains: C
HEMAGGLUTININ HA1 PEPTIDE CHAIN protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41173
95 % 19 20 3295 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 20 3385
70 % 203 363 42
50 % 203 364 83
40 % 203 364 100
30 % 4718 7871 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 48983
95 % 7 8 10341 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 14 4537
70 % 211 375 38
50 % 211 376 77
40 % 211 376 92
30 % 4719 7871 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures