Sequence Similarity Clusters for the Entities in PDB 1FYK

Entity #1 | Chains: C
HSE DNA-PHOSPHATE BACKBONE dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HEAT SHOCK FACTOR PROTEIN protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 4825
95 % 8 9 5150 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 8 9 5178
70 % 8 9 5032
50 % 8 9 4796
40 % 8 9 4507
30 % 8 9 4065

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures