Sequence Similarity Clusters for the Entities in PDB 1FYK

Entity #1 | Chains: C
HSE DNA-PHOSPHATE BACKBONE dna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HEAT SHOCK FACTOR PROTEIN protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6534
95 % 8 9 4704 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 8 9 4722
70 % 8 9 4628
50 % 8 9 4447
40 % 8 9 4234
30 % 8 9 3882

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.