Sequence Similarity Clusters for the Entities in PDB 1FXW

Entity #1 | Chains: A
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB GAMMA SUBUNIT protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39638
95 % 7 9 7803 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 9 7751
70 % 7 9 7541
50 % 7 11 3099
40 % 7 11 3026
30 % 7 11 2837
Entity #2 | Chains: F
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5752
95 % 1 2 6414 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 1 2 6396
70 % 1 2 6247
50 % 8 11 3099
40 % 8 11 3026
30 % 8 11 2837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FXW 2 F PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT 9913 3.1.1.47 | Details
2 1VYH 1 A, B, E, F, I, J, M, N, Q, R PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT 9606 3.1.1.47 | Details