Sequence Similarity Clusters for the Entities in PDB 1FXW

Entity #1 | Chains: A
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB GAMMA SUBUNIT protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34529
95 % 7 9 9189 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 9 9154
70 % 7 9 8916
50 % 7 11 3648
40 % 7 11 3599
30 % 7 11 3515
Entity #2 | Chains: F
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 6815
95 % 1 2 7441 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 1 2 7438
70 % 1 2 7286
50 % 8 11 3648
40 % 8 11 3599
30 % 8 11 3515

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures