Sequence Similarity Clusters for the Entities in PDB 1FXW

Entity #1 | Chains: A
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB GAMMA SUBUNIT protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40005
95 % 7 9 7883 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 9 7831
70 % 7 9 7613
50 % 7 11 3126
40 % 7 11 3050
30 % 7 11 2860
Entity #2 | Chains: F
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB BETA SUBUNIT protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5813
95 % 1 2 6472 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 1 2 6456
70 % 1 2 6303
50 % 8 11 3126
40 % 8 11 3050
30 % 8 11 2860

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures