Sequence Similarity Clusters for the Entities in PDB 1FXL

Entity #1 | Chains: B
5'-R(P*UP*UP*UP*UP*AP*UP*UP*UP*U)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44112
95 % 1 2 33313 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 3 23267
70 % 1 5 12009
50 % 1 5 10707
40 % 1 8 4698
30 % 1 13 3216

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures