Sequence Similarity Clusters for the Entities in PDB 1FVE

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20798
95 % 55 164 69 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 2.3
PDBFlex
90 % 325 693 3
70 % 1085 2265 1
50 % 2221 4589 1
40 % 2221 4589 1
30 % 2534 5394 1
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FAB (HEAVY CHAIN) protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12507
95 % 9 12 3674 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 98 212 40
70 % 1079 2223 2
50 % 2222 4589 1
40 % 2222 4589 1
30 % 2535 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.