Sequence Similarity Clusters for the Entities in PDB 1FVD

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 21122
95 % 48 165 69
90 % 288 701 3
70 % 966 2287 1
50 % 1976 4633 1
40 % 1976 4633 1
30 % 2229 5461 1
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FAB (HEAVY CHAIN) protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39720
95 % 8 12 3712 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 86 217 39
70 % 957 2244 2
50 % 1977 4633 1
40 % 1977 4633 1
30 % 2230 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.