Sequence Similarity Clusters for the Entities in PDB 1FVD

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20751
95 % 48 164 69 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 285 693 3
70 % 956 2264 1
50 % 1956 4587 1
40 % 1956 4587 1
30 % 2200 5392 1
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FAB (HEAVY CHAIN) protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39092
95 % 8 12 3662 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 83 212 40
70 % 947 2222 2
50 % 1957 4587 1
40 % 1957 4587 1
30 % 2201 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.