Sequence Similarity Clusters for the Entities in PDB 1FVD

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21397
95 % 53 171 68 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 301 729 3
70 % 1007 2362 1
50 % 2058 4781 1
40 % 2058 4781 1
30 % 2317 5635 1
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FAB (HEAVY CHAIN) protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40212
95 % 8 12 3766 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 91 229 38
70 % 994 2311 2
50 % 2059 4781 1
40 % 2059 4781 1
30 % 2318 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures