Sequence Similarity Clusters for the Entities in PDB 1FVC

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FV (LIGHT CHAIN) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45526
95 % 2 4 9610 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 4 9505
70 % 86 188 71
50 % 128 302 22
40 % 362 887 5
30 % 408 1013 7
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44954
95 % 2 2 12817 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12607
70 % 151 350 9
50 % 219 540 8
40 % 363 887 5
30 % 409 1013 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.