Sequence Similarity Clusters for the Entities in PDB 1FVC

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FV (LIGHT CHAIN) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47191
95 % 2 4 9952
90 % 2 4 9832
70 % 86 191 73
50 % 130 308 22
40 % 382 936 5
30 % 429 1065 7
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46604
95 % 2 2 13306 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13092
70 % 166 386 9
50 % 237 583 7
40 % 383 936 5
30 % 430 1065 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures