Sequence Similarity Clusters for the Entities in PDB 1FVC

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FV (LIGHT CHAIN) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48085
95 % 2 4 10172
90 % 2 4 10050
70 % 86 193 75
50 % 130 312 23
40 % 385 956 5
30 % 432 1085 7
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47490
95 % 2 2 13604 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 2 2 13378
70 % 169 399 9
50 % 240 599 6
40 % 386 956 5
30 % 433 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures