Sequence Similarity Clusters for the Entities in PDB 1FVC

Entity #1 | Chains: A,C
IGG1-KAPPA 4D5 FV (LIGHT CHAIN) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30951
95 % 2 4 9459 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 4 9346
70 % 94 215 66
50 % 132 319 21
40 % 148 363 27
30 % 2190 7240 1
Entity #2 | Chains: B,D
IGG1-KAPPA 4D5 FV (HEAVY CHAIN) protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30950
95 % 2 2 12633 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 2 2 12434
70 % 175 411 9
50 % 247 613 6
40 % 1785 5806 1
30 % 2191 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures