Sequence Similarity Clusters for the Entities in PDB 1FV1

Entity #1 | Chains: A,D
MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 82 227
95 % 13 89 281 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 15 105 235
70 % 15 105 266
50 % 22 161 184
40 % 22 161 195
30 % 43 334 98
Entity #2 | Chains: B,E
MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7570
95 % 1 4 8143 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 13 84 325
70 % 21 152 161
50 % 22 161 183
40 % 22 161 194
30 % 44 334 98
Entity #3 | Chains: C,F
MYELIN BASIC PROTEIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51193
95 % 1 1 38285
90 % 1 1 36526
70 % 1 1 32479
50 % 1 1 27784
40 % 1 1 24594
30 % 1 1 20957

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures