Sequence Similarity Clusters for the Entities in PDB 1FV1

Entity #1 | Chains: A,D
MAJOR HISTOCOMPATIBILITY COMPLEX ALPHA CHAIN protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 74 232
95 % 12 81 297 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 14 97 238
70 % 14 97 272
50 % 18 149 180
40 % 18 149 196
30 % 35 310 98
Entity #2 | Chains: B,E
MAJOR HISTOCOMPATIBILITY COMPLEX BETA CHAIN protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 7283
95 % 1 4 7860 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 12 76 342
70 % 17 140 164
50 % 18 149 179
40 % 18 149 195
30 % 36 310 98
Entity #3 | Chains: C,F
MYELIN BASIC PROTEIN protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49615
95 % 1 1 37153
90 % 1 1 35492
70 % 1 1 31607
50 % 1 1 27078
40 % 1 1 23969
30 % 1 1 20436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.