Sequence Similarity Clusters for the Entities in PDB 1FSK

Entity #1 | Chains: A,D,G,J
MAJOR POLLEN ALLERGEN BET V 1-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13495
95 % 23 26 1535 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 24 27 1482
70 % 24 27 1489
50 % 42 50 708
40 % 51 59 475
30 % 55 63 442
Entity #2 | Chains: B,E,H,K
IMMUNOGLOBULIN KAPPA LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21396
95 % 7 8 4466 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 51 73 416
70 % 1957 2362 1
50 % 3967 4781 1
40 % 3967 4781 1
30 % 4692 5635 1
Entity #3 | Chains: C,F,I,L
ANTIBODY HEAVY CHAIN FAB protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21171
95 % 1 1 18446 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 18039
70 % 1913 2311 2
50 % 3968 4781 1
40 % 3968 4781 1
30 % 4693 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures