Sequence Similarity Clusters for the Entities in PDB 1FSK

Entity #1 | Chains: A,D,G,J
MAJOR POLLEN ALLERGEN BET V 1-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12900
95 % 23 26 1445 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 24 27 1403
70 % 24 27 1427
50 % 42 50 658
40 % 51 59 448
30 % 55 63 410
Entity #2 | Chains: B,E,H,K
IMMUNOGLOBULIN KAPPA LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20446
95 % 7 8 4252 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.5
PDBFlex
90 % 49 66 419
70 % 1540 1822 2
50 % 3756 4489 1
40 % 3756 4489 1
30 % 4433 5290 1
Entity #3 | Chains: C,F,I,L
ANTIBODY HEAVY CHAIN FAB protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20229
95 % 1 1 17647 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 17259
70 % 1815 2172 1
50 % 3757 4489 1
40 % 3757 4489 1
30 % 4434 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.