Sequence Similarity Clusters for the Entities in PDB 1FSK

Entity #1 | Chains: A,D,G,J
MAJOR POLLEN ALLERGEN BET V 1-A protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 23 2030
95 % 24 27 1518 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 24 27 1547
70 % 24 27 1562
50 % 44 52 707
40 % 53 61 491
30 % 57 65 465
Entity #2 | Chains: B,E,H,K
IMMUNOGLOBULIN KAPPA LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24642
95 % 9 10 3793 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 11 12 3377
70 % 2068 2516 1
50 % 4200 5101 1
40 % 4722 5750 1
30 % 5887 7168 1
Entity #3 | Chains: C,F,I,L
ANTIBODY HEAVY CHAIN FAB protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24643
95 % 1 1 21811 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 21153
70 % 2035 2475 2
50 % 4201 5101 1
40 % 4723 5750 1
30 % 5888 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures