Sequence Similarity Clusters for the Entities in PDB 1FRG

Entity #1 | Chains: L
IGG2A 26/9 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60289
95 % 6 13 3746 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 2.4
PDBFlex
90 % 56 83 307
70 % 1375 2327 1
50 % 2800 4713 1
40 % 2800 4713 1
30 % 3233 5567 1
Entity #2 | Chains: H
IGG2A 26/9 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59962
95 % 1 1 42151
90 % 7 15 2388
70 % 1353 2280 2
50 % 2801 4713 1
40 % 2801 4713 1
30 % 3234 5567 1
Entity #3 | Chains: P
INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101 - 108) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.