Sequence Similarity Clusters for the Entities in PDB 1FRF

Entity #1 | Chains: S
[NI-FE] HYDROGENASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1073
95 % 20 20 933 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 20 20 967
70 % 20 20 1003
50 % 51 52 524
40 % 68 69 468
30 % 89 91 378
Entity #2 | Chains: L
[NI-FE] HYDROGENASE protein, length: 564 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51905
95 % 20 20 932 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 20 20 965
70 % 20 20 999
50 % 73 75 411
40 % 81 83 400
30 % 107 109 293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4UQL 2 Q, R NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
2 4UQP 2 Q, R PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
3 4URH 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
4 4UPV 2 Q, R NIFE-HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
5 4UEQ 2 Q, R, S, T, U, V NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
6 4UPE 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT UNP RESIDUES 5-549 878 1.12.2.1 | Details
7 1YQW 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
8 4UE2 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
9 4UD6 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
10 4UCX 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
11 1YRQ 2 H, I, J, K, M, N Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
12 4UEW 2 Q, R, S PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
13 4UE6 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
14 3CUS 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
15 3CUR 2 H, I, J Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
16 4UD2 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
17 4UCW 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
18 4UCQ 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
19 3H3X 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
20 1FRF 2 L [NI-FE] HYDROGENASE LARGE CHAIN 878 1.12.2.1 | Details