Sequence Similarity Clusters for the Entities in PDB 1FRF

Entity #1 | Chains: S
[NI-FE] HYDROGENASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1073
95 % 20 20 933 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 20 20 967
70 % 20 20 1003
50 % 51 52 524
40 % 68 69 468
30 % 89 91 378
Entity #2 | Chains: L
[NI-FE] HYDROGENASE protein, length: 564 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51905
95 % 20 20 932 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 20 20 965
70 % 20 20 999
50 % 73 75 411
40 % 81 83 400
30 % 107 109 293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4U9H 2 L Periplasmic [NiFe] hydrogenase large subunit 881 1.12.2.1 | Details
2 1WUI 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
3 4U9I 2 L Periplasmic [NiFe] hydrogenase large subunit 881 1.12.2.1 | Details
4 1WUK 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
5 5ADU 1 L, M Hydrogenase-1 large chain DOUBLE MUTANT PROTEIN CATALYTIC DOMAIN, RESIDUES 46-372 562 1.12.99.6 | Details
6 1UBK 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
7 5LMM 2 L, M Hydrogenase-1 large chain Mutant E28Q introduced into large subunit. Cys 79 modelled as CSO due to oxidative damage at this position. 562 1.12.99.6 | Details
8 1UBL 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
9 5JRD 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
10 3AYX 1 A, C Membrane-bound hydrogenase large subunit 28885 1.12.5.1 | Details
11 4UQL 2 Q, R NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
12 1WUH 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
13 5A4I 1 L, M Hydrogenase-1 large chain CATALYTIC DOMAIN, UNP RESIDUES 1-582 562 1.12.99.6 | Details
14 3AYZ 1 A, C Membrane-bound hydrogenase large subunit 28885 1.12.5.1 | Details
15 5A4F 1 L, M Hydrogenase-1 large chain CATALYTIC DOMAIN, RESIDUES 1-582 562 1.12.99.6 | Details
16 5Y34 1 A, C Hydrogenase UNP residues 1-596 28885 1.12.5.1 | Details
17 1UBR 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
18 1UBO 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
19 1UBT 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
20 1UBU 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
21 1UBJ 2 L Periplasmic [NiFe] hydrogenase large subunit RESIDUES 19-552 881 1.12.2.1 | Details
22 1UBH 2 L Periplasmic [NiFe] hydrogenase large subunit RESIDUES 19-552 881 1.12.2.1 | Details
23 1UBM 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
24 1WUJ 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
25 4UQP 2 Q, R PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
26 4UE3 1 L, M HYDROGENASE-1 SMALL CHAIN CATALYTIC DOMAIN, RESIDUES 46-372 562 1.12.99.6 | Details
27 5MDL 1 L Uptake hydrogenase large subunit;HOXG 106590 1.12.99.6 | Details
28 5LRY 2 L, M Hydrogenase-1 large chain Cys 576 shos oxidation damage and is modelled as sulfinic acid (csd). Mutatiojn E28D introduced to test function of variant protein. 562 1.12.99.6 | Details
29 6GAM 2 L, M Hydrogenase-2 large chain Variant E14Q 562 1.12.99.6 | Details
30 4IUC 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
31 3UQY 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
32 4IUD 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
33 4URH 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
34 5D51 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
35 1WUL 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
36 6EHS 2 L, M Hydrogenase-2 large chain Oxidative damage of cys 548 was modeled as sulfenic acid (CSO) 562 1.12.99.6 | Details
37 5MDK 1 L Uptake hydrogenase large subunit; HOXG 106590 1.12.99.6 | Details
38 4UPV 2 Q, R NIFE-HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
39 5MDJ 1 L Uptake hydrogenase large subunit; HOXG 106590 1.12.99.6 | Details
40 3RGW 1 L Membrane-bound hydrogenase (NIFE) large subunit HOXG 106590 1.12.99.6 | Details
41 6FPI 2 L, M Hydrogenase-1 large chain Variant E28Q 562 1.12.99.6 | Details
42 5XVD 1 L, M [NiFe]-hydrogenase 2 large subunit 1080067
43 6EN9 2 L, M Hydrogenase-2 large chain 562 1.12.99.6 | Details
44 1H2R 2 L PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT) 881 1.12.2.1 | Details
45 4IUB 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
46 3USE 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
47 5XLG 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
48 6GAN 2 L, M Hydrogenase-2 large chain Variant E14Q 562 1.12.99.6 | Details
49 5Y4N 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
50 5A4M 1 L, M HYDROGENASE-1 LARGE CHAIN CATALYTIC DOMAIN, UNP RESIDUES 46-311 562 1.12.99.6 | Details
51 4UEQ 2 Q, R, S, T, U, V NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
52 5XLE 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
53 4TTT 1 L Uptake hydrogenase large subunit hoxG UNP residues 1-603 106590 1.12.99.6 | Details
54 5XLF 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
55 4UPE 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT UNP RESIDUES 5-549 878 1.12.2.1 | Details
56 1YQW 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
57 1E3D 2 B, D [NiFe] hydrogenase large subunit 876
58 5XVB 1 L, M [NiFe]-hydrogenase 2 large subunit 1080067
59 3USC 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
60 5XLH 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
61 3MYR 2 B, D, F, H Nickel-dependent hydrogenase large subunit 1049
62 4UE2 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
63 1H2A 2 L HYDROGENASE 881 1.12.2.1 | Details
64 5XVC 1 L, M [NiFe]-hydrogenase 2 large subunit 1080067
65 4UD6 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
66 4UCX 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
67 1YRQ 2 H, I, J, K, M, N Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
68 6EHQ 2 L, M Hydrogenase-2 large chain 562 1.12.99.6 | Details
69 1YQ9 2 H, I Periplasmic [NiFe] hydrogenase large subunit 879 1.12.2.1 | Details
70 4UEW 2 Q, R, S PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
71 4UE6 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
72 3CUS 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
73 3CUR 2 H, I, J Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
74 4UD2 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
75 4UCW 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
76 2FRV 2 B, D, F, H, J, L PERIPLASMIC HYDROGENASE 879 1.12.2.1 | Details
77 4UCQ 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
78 6G94 2 J, K, L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
79 3H3X 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
80 4C3O 1 A, C, E HYDROGENASE-1 LARGE SUBUNIT RESIDUES 1-585 28901 1.12.7.2 | Details
81 1FRF 2 L [NI-FE] HYDROGENASE LARGE CHAIN 878 1.12.2.1 | Details
82 4GD3 2 J, K, L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
83 1FRV 2 B, D HYDROGENASE 879 1.12.2.1 | Details