Sequence Similarity Clusters for the Entities in PDB 1FRF

Entity #1 | Chains: S
[NI-FE] HYDROGENASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1073
95 % 20 20 933 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 20 20 967
70 % 20 20 1003
50 % 51 52 524
40 % 68 69 468
30 % 89 91 378
Entity #2 | Chains: L
[NI-FE] HYDROGENASE protein, length: 564 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51905
95 % 20 20 932 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 20 20 965
70 % 20 20 999
50 % 73 75 411
40 % 81 83 400
30 % 107 109 293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4U9H 2 L Periplasmic [NiFe] hydrogenase large subunit 881 1.12.2.1 | Details
2 5JSK 2 B Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing 881 1.12.7.2 | Details
3 1WUI 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
4 5JSY 2 B Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing 881 1.12.7.2 | Details
5 4U9I 2 L Periplasmic [NiFe] hydrogenase large subunit 881 1.12.2.1 | Details
6 1WUK 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
7 5ADU 1 L, M Hydrogenase-1 large chain DOUBLE MUTANT PROTEIN CATALYTIC DOMAIN, RESIDUES 46-372 562 1.12.99.6 | Details
8 1UBK 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
9 5LMM 2 L, M Hydrogenase-1 large chain Mutant E28Q introduced into large subunit. Cys 79 modelled as CSO due to oxidative damage at this position. 562 1.12.99.6 | Details
10 1UBL 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
11 5JRD 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
12 3AYX 1 A, C Membrane-bound hydrogenase large subunit 28885 1.12.5.1 | Details
13 4UQL 2 Q, R NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
14 1WUH 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
15 5A4I 1 L, M Hydrogenase-1 large chain CATALYTIC DOMAIN, UNP RESIDUES 1-582 562 1.12.99.6 | Details
16 3AYZ 1 A, C Membrane-bound hydrogenase large subunit 28885 1.12.5.1 | Details
17 5A4F 1 L, M Hydrogenase-1 large chain CATALYTIC DOMAIN, RESIDUES 1-582 562 1.12.99.6 | Details
18 5JSH 2 B Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing Cysteine 75 is oxidized to sulfenate (CSD) in the crystal structure 881 1.12.7.2 | Details
19 5Y34 1 A, C Hydrogenase UNP residues 1-596 28885 1.12.5.1 | Details
20 5JT1 2 B Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing Cys489 is oxidized to sulfinate (CSD) 881 1.12.7.2 | Details
21 1UBR 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
22 1UBO 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
23 3ZE9 2 B PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING RESIDUES 12-495 881 1.12.7.2 | Details
24 1UBT 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
25 1UBU 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
26 1UBJ 2 L Periplasmic [NiFe] hydrogenase large subunit RESIDUES 19-552 881 1.12.2.1 | Details
27 1UBH 2 L Periplasmic [NiFe] hydrogenase large subunit RESIDUES 19-552 881 1.12.2.1 | Details
28 5JSU 2 B Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing Cys489 oxidized to sulfinate (CSD) in crystal structure 881 1.12.7.2 | Details
29 1UBM 2 L Periplasmic [NiFe] hydrogenase Large subunit RESIDUES 19-552 881 1.12.2.1 | Details
30 1WUJ 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
31 4KN9 2 L, M Nickel-dependent hydrogenase large subunit 899 1.12.99.6 | Details
32 4UQP 2 Q, R PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
33 4UE3 1 L, M HYDROGENASE-1 SMALL CHAIN CATALYTIC DOMAIN, RESIDUES 46-372 562 1.12.99.6 | Details
34 5MDL 1 L Uptake hydrogenase large subunit;HOXG 106590 1.12.99.6 | Details
35 5LRY 2 L, M Hydrogenase-1 large chain Cys 576 shos oxidation damage and is modelled as sulfinic acid (csd). Mutatiojn E28D introduced to test function of variant protein. 562 1.12.99.6 | Details
36 6GAM 2 L, M Hydrogenase-2 large chain Variant E14Q 562 1.12.99.6 | Details
37 4IUC 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
38 3UQY 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
39 4IUD 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
40 4URH 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
41 5D51 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
42 1WUL 2 L Periplasmic [NiFe] hydrogenase large subunit residues 19-552 881 1.12.2.1 | Details
43 6EHS 2 L, M Hydrogenase-2 large chain Oxidative damage of cys 548 was modeled as sulfenic acid (CSO) 562 1.12.99.6 | Details
44 5MDK 1 L Uptake hydrogenase large subunit; HOXG 106590 1.12.99.6 | Details
45 4UPV 2 Q, R NIFE-HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
46 4KL8 2 L, M Nickel-dependent hydrogenase large subunit 899 1.12.99.6 | Details
47 5MDJ 1 L Uptake hydrogenase large subunit; HOXG 106590 1.12.99.6 | Details
48 3ZE6 2 B PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYS SELENOCYSTEINE-CONTAINING CYSTEINE B 75 IS OXIDIZED TO CYSTEINE SULFINIC ACID 881 1.12.7.2 | Details
49 3RGW 1 L Membrane-bound hydrogenase (NIFE) large subunit HOXG 106590 1.12.99.6 | Details
50 6FPI 2 L, M Hydrogenase-1 large chain Variant E28Q 562 1.12.99.6 | Details
51 5XVD 1 L, M [NiFe]-hydrogenase 2 large subunit 1080067
52 6EN9 2 L, M Hydrogenase-2 large chain 562 1.12.99.6 | Details
53 1H2R 2 L PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT) 881 1.12.2.1 | Details
54 4KO1 2 L, M Nickel-dependent hydrogenase large subunit 899 1.12.7.2 | Details
55 4IUB 1 L Uptake hydrogenase large subunit UNP residues 1-603 106590 1.12.99.6 | Details
56 3USE 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
57 5XLG 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
58 6GAN 2 L, M Hydrogenase-2 large chain Variant E14Q 562 1.12.99.6 | Details
59 4KO2 2 L, M Nickel-dependent hydrogenase large subunit 899 1.12.7.2 | Details
60 5Y4N 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
61 5A4M 1 L, M HYDROGENASE-1 LARGE CHAIN CATALYTIC DOMAIN, UNP RESIDUES 46-311 562 1.12.99.6 | Details
62 4UEQ 2 Q, R, S, T, U, V NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
63 5XLE 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
64 4TTT 1 L Uptake hydrogenase large subunit hoxG UNP residues 1-603 106590 1.12.99.6 | Details
65 5XLF 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
66 3ZEA 2 B PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING RESIDUES 12-495 881 1.12.7.2 | Details
67 4KO3 2 L, M Nickel-dependent hydrogenase large subunit 899 1.12.7.2 | Details
68 3ZE8 2 B PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING RESIDUES 12-495 881 1.12.7.2 | Details
69 4UPE 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT UNP RESIDUES 5-549 878 1.12.2.1 | Details
70 1YQW 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
71 1E3D 2 B, D [NiFe] hydrogenase large subunit 876
72 5XVB 1 L, M [NiFe]-hydrogenase 2 large subunit 1080067
73 3ZE7 2 B PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING CYSTEINE B 75 IS OXIDIZED TO CYSTEINE SULFINIC ACID RESIDUES 12-495 881 1.12.7.2 | Details
74 3USC 2 L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
75 4KO4 2 L, M Nickel-dependent hydrogenase large subunit 899 1.12.7.2 | Details
76 5XLH 2 L Periplasmic [NiFe] hydrogenase large subunit UNP residues 1-552 881 1.12.2.1 | Details
77 2WPN 2 B PERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING RESIDUES 1-495 881 1.12.7.2 | Details
78 3MYR 2 B, D, F, H Nickel-dependent hydrogenase large subunit 1049
79 4UE2 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
80 1H2A 2 L HYDROGENASE 881 1.12.2.1 | Details
81 5XVC 1 L, M [NiFe]-hydrogenase 2 large subunit 1080067
82 4UD6 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
83 4UCX 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
84 1YRQ 2 H, I, J, K, M, N Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
85 6EHQ 2 L, M Hydrogenase-2 large chain 562 1.12.99.6 | Details
86 1YQ9 2 H, I Periplasmic [NiFe] hydrogenase large subunit 879 1.12.2.1 | Details
87 4UEW 2 Q, R, S PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
88 4UE6 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT 878 1.12.2.1 | Details
89 1CC1 2 L HYDROGENASE (LARGE SUBUNIT) COMPLEXED WITH IRON/SULFUR CLUSTER, CARBONMONOXIDE-(DICYANO) IRON, HYDROSULFURIC ACID 899 1.12.7.2 | Details
90 5ODQ 6 F, L Methyl-viologen reducing hydrogenase, subunit A The C-terminus has been post-translationally cleaved 2186 1.12.99.6 | Details
91 3CUS 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
92 3CUR 2 H, I, J Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
93 4UD2 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
94 5ODC 6 F, L Methyl-viologen reducing hydrogenase subunit A GB ref WP_018154262.1, The C-terminus has been post-translationally cleaved 2186 1.12.99.6 | Details
95 5ODR 6 F, L Methyl-viologen reducing hydrogenase, subunit A The C-terminus has been post-translationally cleaved. 2186 1.12.99.6 | Details
96 4UCW 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
97 5ODH 6 F, L Methyl-viologen reducing hydrogenase, subunit A The C-terminus has been already post-translationally cleaved 2186 1.12.1.2 | Details
98 5ODI 6 F, L Methyl-viologen reducing hydrogenase, subunit A The C-terminus has been post-translationally cleaved 2186 1.12.1.2 | Details
99 5AA5 2 C, E, G, I, K, L NIFE-HYDROGENASE LARGE SUBUNIT, HOFG 106590 1.12.99.6 | Details
100 2FRV 2 B, D, F, H, J, L PERIPLASMIC HYDROGENASE 879 1.12.2.1 | Details
101 5XF9 4 D, H NAD-reducing hydrogenase UNP residues 1-468 297
102 4UCQ 2 Q, R, S NICKEL-DEPENDENT HYDROGENASE LARGE SUBUNIT RESIDUES 2-549 878 1.12.2.1 | Details
103 6G94 2 J, K, L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
104 5XFA 4 D, H NAD-reducing hydrogenase UNP residues 1-468 297
105 3H3X 2 Q, R, S Periplasmic [NiFe] hydrogenase large subunit 878 1.12.2.1 | Details
106 4C3O 1 A, C, E HYDROGENASE-1 LARGE SUBUNIT RESIDUES 1-585 28901 1.12.7.2 | Details
107 1FRF 2 L [NI-FE] HYDROGENASE LARGE CHAIN 878 1.12.2.1 | Details
108 4GD3 2 J, K, L, M Hydrogenase-1 large chain 562 1.12.99.6 | Details
109 1FRV 2 B, D HYDROGENASE 879 1.12.2.1 | Details