Sequence Similarity Clusters for the Entities in PDB 1FRF

Entity #1 | Chains: S
[NI-FE] HYDROGENASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1073
95 % 20 20 933 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 20 20 967
70 % 20 20 1003
50 % 51 52 524
40 % 68 69 468
30 % 89 91 378
Entity #2 | Chains: L
[NI-FE] HYDROGENASE protein, length: 564 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51905
95 % 20 20 932 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 20 20 965
70 % 20 20 999
50 % 73 75 411
40 % 81 83 400
30 % 107 109 293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4U9H 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
2 1WUI 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
3 4U9I 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
4 1WUK 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
5 1UBK 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
6 1UBL 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
7 3AYX 2 B, D Membrane-bound hydrogenase small subunit UNP residues 41-323 28885 1.12.5.1 | Details
8 4UQL 1 A, B HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 50-314 878 1.12.2.1 | Details
9 1WUH 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
10 3AYZ 2 B, D Membrane-bound hydrogenase small subunit UNP residues 41-323 28885 1.12.5.1 | Details
11 5Y34 2 B, D Membrane-bound hydrogenase small subunit UNP residues 41-323 28885
12 1UBR 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
13 1UBO 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
14 3ZE9 1 A PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT RESIDUES 35-317 881 1.12.7.2 | Details
15 1UBT 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
16 1UBU 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
17 1UBJ 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
18 1UBH 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
19 1UBM 1 S Periplasmic [NiFe] hydrogenase Small subunit 881 1.12.2.1 | Details
20 1WUJ 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
21 4KN9 1 S, T Periplasmic [NiFeSe] hydrogenase small subunit 899 1.12.99.6 | Details
22 4UQP 1 A, B PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT UNP RESIDUES 50-314 878 1.12.2.1 | Details
23 6GAM 1 S, T Hydrogenase-2 small chain 562 1.12.99.6 | Details
24 4URH 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
25 1WUL 1 S Periplasmic [NiFe] hydrogenase small subunit 881 1.12.2.1 | Details
26 6EHS 1 S, T Hydrogenase-2 small chain 562 1.12.99.6 | Details
27 4UPV 1 A, B NIFE-HYDROGENASE SMALL SUBUNIT RESIDUES 50-314 878 1.12.2.1 | Details
28 4KL8 1 S, T Periplasmic [NiFeSe] hydrogenase small subunit 899 1.12.99.6 | Details
29 3ZE6 1 A PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT 881 1.12.7.2 | Details
30 6EN9 1 S, T Hydrogenase-2 small chain 562 1.12.99.6 | Details
31 1H2R 1 S PROTEIN (PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT) 881 1.12.2.1 | Details
32 4KO1 1 S, T Periplasmic [NiFeSe] hydrogenase small subunit 899 1.12.99.6 | Details
33 5XLG 1 S Periplasmic [NiFe] hydrogenase small subunit UNP residues 51-317 881 1.12.2.1 | Details
34 6GAN 1 S, T Hydrogenase-2 small chain 562 1.12.99.6 | Details
35 4KO2 1 S, T Periplasmic [NiFeSe] hydrogenase small subunit 899 1.12.99.6 | Details
36 5Y4N 1 S Periplasmic [NiFe] hydrogenase small subunit UNP residues 51-317 881 1.12.2.1 | Details
37 5A4M 2 S, T HYDROGENASE-1 SMALL CHAIN UNP RESIDUES 1-582 562 1.12.99.6 | Details
38 4UEQ 1 A, B, C, D, E, F HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
39 5XLE 1 S Periplasmic [NiFe] hydrogenase small subunit UNP residues 51-317 881 1.12.2.1 | Details
40 5XLF 1 S Periplasmic [NiFe] hydrogenase small subunit UNP residues 51-317 881 1.12.2.1 | Details
41 3ZEA 1 A PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT RESIDUES 35-317 881 1.12.7.2 | Details
42 4KO3 1 S, T Periplasmic [NiFeSe] hydrogenase small subunit 899 1.12.99.6 | Details
43 3ZE8 1 A PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT RESIDUES 35-317 881 1.12.7.2 | Details
44 4UPE 1 A, B, C NIFE-HYDROGENASE SMALL SUBUNIT UNP RESIDUES 53-314 878 1.12.2.1 | Details
45 1YQW 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
46 1E3D 1 A, C [NiFe] hydrogenase small subunit 876
47 3ZE7 1 A PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNIT CYSTEINE B 75 IS OXIDIZED TO CYSTEINE SULFINIC ACID RESIDUES 35-317 881 1.12.7.2 | Details
48 4KO4 1 S, T Periplasmic [NiFeSe] hydrogenase small subunit 899 1.12.99.6 | Details
49 5XLH 1 S Periplasmic [NiFe] hydrogenase small subunit UNP residues 51-317 881 1.12.2.1 | Details
50 3MYR 1 A, C, E, G Hydrogenase (NiFe) small subunit HydA 1049 1.12.99.6 | Details
51 4UE2 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
52 4UD6 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
53 4UCX 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
54 1YRQ 1 A, B, C, D, F, G Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
55 6EHQ 1 S, T Hydrogenase-2 small chain 562 1.12.99.6 | Details
56 1YQ9 1 A, B Periplasmic [NiFe] hydrogenase small subunit 879 1.12.2.1 | Details
57 4UEW 1 A, B, C PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT 878 1.12.2.1 | Details
58 4UE6 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
59 1CC1 1 S HYDROGENASE (SMALL SUBUNIT) 899 1.12.99.6 | Details
60 3CUS 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
61 3CUR 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
62 4UD2 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
63 4UCW 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
64 2FRV 1 A, C, E, G, I, S PERIPLASMIC HYDROGENASE 879 1.12.2.1 | Details
65 4UCQ 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
66 3H3X 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
67 4C3O 2 B, D, F HYDROGENASE-1 SMALL SUBUNIT RESIDUES 46-314 28901 1.12.7.2 | Details
68 1FRF 1 S [NI-FE] HYDROGENASE SMALL CHAIN 878 1.12.2.1 | Details
69 1FRV 1 A, C HYDROGENASE 879 1.12.2.1 | Details