Sequence Similarity Clusters for the Entities in PDB 1FRF

Entity #1 | Chains: S
[NI-FE] HYDROGENASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 1073
95 % 20 20 933 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 20 20 967
70 % 20 20 1003
50 % 51 52 524
40 % 68 69 468
30 % 89 91 378
Entity #2 | Chains: L
[NI-FE] HYDROGENASE protein, length: 564 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51905
95 % 20 20 932 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 20 20 965
70 % 20 20 999
50 % 73 75 411
40 % 81 83 400
30 % 107 109 293

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4UEQ 1 A, B, C, D, E, F HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
2 1YQW 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
3 4UE2 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
4 4UD6 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
5 4UCX 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
6 1YRQ 1 A, B, C, D, F, G Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
7 4UEW 1 A, B, C PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT 878 1.12.2.1 | Details
8 4UE6 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA 878 1.12.2.1 | Details
9 3CUS 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
10 3CUR 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
11 4UD2 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
12 4UCQ 1 A, B, C HYDROGENASE (NIFE) SMALL SUBUNIT HYDA RESIDUES 51-314 878 1.12.2.1 | Details
13 3H3X 1 A, B, C Periplasmic [NiFe] hydrogenase small subunit 878 1.12.2.1 | Details
14 1FRF 1 S [NI-FE] HYDROGENASE SMALL CHAIN 878 1.12.2.1 | Details