Sequence Similarity Clusters for the Entities in PDB 1FQV

Entity #1 | Chains: A,C,E,G,I,K,M,O
SKP2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6399
95 % 3 3 7046 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 7037
70 % 3 3 6860
50 % 3 3 6372
40 % 3 3 5952
30 % 3 3 5342
Entity #2 | Chains: B,D,F,H,J,L,N,P
SKP1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4586
95 % 10 10 3324 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 10 10 3368
70 % 19 21 1749
50 % 33 38 731
40 % 33 38 762
30 % 33 38 762

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures