Sequence Similarity Clusters for the Entities in PDB 1FQV

Entity #1 | Chains: A,C,E,G,I,K,M,O
SKP2 protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 6258
95 % 3 3 6902 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 3 3 6886
70 % 3 3 6721
50 % 3 3 6245
40 % 3 3 5839
30 % 3 3 5235
Entity #2 | Chains: B,D,F,H,J,L,N,P
SKP1 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 4466
95 % 10 10 3246 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 10 10 3289
70 % 19 21 1701
50 % 33 38 723
40 % 33 38 752
30 % 33 38 750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures