Sequence Similarity Clusters for the Entities in PDB 1FQJ

Entity #1 | Chains: A,D
Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14619
95 % 2 4 8580 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 5 7 4339
70 % 20 66 396
50 % 20 77 418
40 % 20 97 355
30 % 20 99 344
Entity #2 | Chains: B,E
Regulator of G-protein signaling 9 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15529
95 % 2 3 14556 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 3 14284
70 % 2 3 13413
50 % 2 3 11923
40 % 10 28 1271
30 % 12 33 1123
Entity #3 | Chains: C
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73093
95 % 1 1 50913
90 % 1 1 48339
70 % 1 1 42384
50 % 1 1 36158
40 % 1 1 31842
30 % 1 1 26939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.