Sequence Similarity Clusters for the Entities in PDB 1FQJ

Entity #1 | Chains: A,D
Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14841
95 % 2 4 8710 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 5 7 4415
70 % 20 66 403
50 % 20 77 432
40 % 20 97 380
30 % 20 99 363
Entity #2 | Chains: B,E
Regulator of G-protein signaling 9 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15766
95 % 2 3 14760 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 3 14486
70 % 2 3 13600
50 % 2 3 12084
40 % 10 28 1287
30 % 12 33 1149
Entity #3 | Chains: C
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74069
95 % 1 1 51564
90 % 1 1 48914
70 % 1 1 42843
50 % 1 1 36540
40 % 1 1 32171
30 % 1 1 27223

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures