Sequence Similarity Clusters for the Entities in PDB 1FQJ

Entity #1 | Chains: A,D
Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16877
95 % 2 4 10209 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.3
PDBFlex
90 % 5 7 4615
70 % 20 66 439
50 % 20 77 451
40 % 21 103 383
30 % 21 103 386
Entity #2 | Chains: B,E
Regulator of G-protein signaling 9 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17031
95 % 2 3 15804 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 3 15472
70 % 2 3 14473
50 % 2 3 12769
40 % 8 28 1331
30 % 12 33 1184
Entity #3 | Chains: C
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63756
95 % 1 1 51775
90 % 1 1 49099
70 % 1 1 42985
50 % 1 1 36469
40 % 1 1 31918
30 % 1 1 26688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures