Sequence Similarity Clusters for the Entities in PDB 1FQJ

Entity #1 | Chains: A,D
Guanine nucleotide-binding protein G(t) subunit alpha-1,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(t) subunit alpha-1 protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14412
95 % 2 4 8470 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.8
PDBFlex
90 % 5 7 4284
70 % 20 66 393
50 % 20 77 413
40 % 20 97 347
30 % 20 99 339
Entity #2 | Chains: B,E
Regulator of G-protein signaling 9 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15307
95 % 2 3 14344 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 2 3 14069
70 % 2 3 13198
50 % 2 3 11743
40 % 10 28 1260
30 % 12 33 1114
Entity #3 | Chains: C
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72020
95 % 1 1 50093
90 % 1 1 47574
70 % 1 1 41831
50 % 1 1 35771
40 % 1 1 31519
30 % 1 1 26667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.