Sequence Similarity Clusters for the Entities in PDB 1FPT

Entity #1 | Chains: P
FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
IGG2A-KAPPA C3 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28614
95 % 139 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 149 158 148
70 % 1989 2474 1
50 % 4035 5011 1
40 % 4035 5011 1
30 % 4811 5941 1
Entity #3 | Chains: H
IGG2A-KAPPA C3 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28583
95 % 1 3 23812
90 % 2 4 18499
70 % 1947 2424 2
50 % 4036 5011 1
40 % 4036 5011 1
30 % 4812 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures