Sequence Similarity Clusters for the Entities in PDB 1FPT

Entity #1 | Chains: P
FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
IGG2A-KAPPA C3 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28253
95 % 139 148 148 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 149 158 146
70 % 1952 2426 1
50 % 3959 4913 1
40 % 3959 4913 1
30 % 4673 5780 1
Entity #3 | Chains: H
IGG2A-KAPPA C3 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28222
95 % 1 3 23515
90 % 2 4 18263
70 % 1910 2376 2
50 % 3960 4913 1
40 % 3960 4913 1
30 % 4674 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures