Sequence Similarity Clusters for the Entities in PDB 1FPT

Entity #1 | Chains: P
FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: L
IGG2A-KAPPA C3 FAB (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28878
95 % 136 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 150 162 147
70 % 2035 2553 1
50 % 4136 5180 1
40 % 4655 5834 1
30 % 5806 7269 1
Entity #3 | Chains: H
IGG2A-KAPPA C3 FAB (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28879
95 % 1 3 25243
90 % 2 4 19894
70 % 2000 2511 2
50 % 4137 5180 1
40 % 4656 5834 1
30 % 5807 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures