Sequence Similarity Clusters for the Entities in PDB 1FPP

Entity #1 | Chains: B
PROTEIN FARNESYLTRANSFERASE protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 41 1128
95 % 50 56 958
90 % 50 56 986
70 % 50 56 1020
50 % 50 56 1067
40 % 50 56 1075
30 % 50 56 1080
Entity #2 | Chains: A
PROTEIN FARNESYLTRANSFERASE protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 34 433
95 % 42 42 495 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 55 56 418
70 % 55 56 458
50 % 55 56 515
40 % 55 56 562
30 % 55 56 566

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures