Sequence Similarity Clusters for the Entities in PDB 1FPN

Entity #1 | Chains: 1
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12309
95 % 1 6 11952 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 6 11783
70 % 2 20 3128
50 % 2 20 3061
40 % 11 159 276
30 % 11 159 285
Entity #2 | Chains: 2
COAT PROTEIN VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12528
95 % 1 6 12117 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 1 6 11949
70 % 2 20 3144
50 % 10 159 303
40 % 10 159 315
30 % 16 194 165
Entity #3 | Chains: 3
COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12731
95 % 1 6 12288 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 1 6 12112
70 % 2 20 3155
50 % 11 168 240
40 % 11 170 258
30 % 17 209 148
Entity #4 | Chains: 4
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 24374
95 % 1 4 20812 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 13 5252
70 % 2 13 5173
50 % 9 122 435
40 % 9 123 463
30 % 9 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.