Sequence Similarity Clusters for the Entities in PDB 1FPN

Entity #1 | Chains: 1
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 14366
95 % 1 6 13485 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 1 6 13256
70 % 2 20 3332
50 % 2 20 3257
40 % 11 160 301
30 % 11 160 314
Entity #2 | Chains: 2
COAT PROTEIN VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13404
95 % 1 6 12693 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 1 6 12494
70 % 2 20 3151
50 % 10 160 350
40 % 10 160 375
30 % 16 197 181
Entity #3 | Chains: 3
COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13405
95 % 1 6 12694 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 1 6 12495
70 % 2 20 3266
50 % 11 169 258
40 % 11 171 282
30 % 17 210 162
Entity #4 | Chains: 4
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 20575
95 % 1 4 18601 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 13 5424
70 % 2 13 5304
50 % 9 122 459
40 % 9 123 491
30 % 9 123 490

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures