Sequence Similarity Clusters for the Entities in PDB 1FPN

Entity #1 | Chains: 1
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11920
95 % 1 6 11577 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 6 11414
70 % 2 20 3037
50 % 2 20 2977
40 % 11 155 275
30 % 11 155 282
Entity #2 | Chains: 2
COAT PROTEIN VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12133
95 % 1 6 11738 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.7
PDBFlex
90 % 1 6 11574
70 % 2 20 3053
50 % 10 157 293
40 % 10 157 307
30 % 16 192 163
Entity #3 | Chains: 3
COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12328
95 % 1 6 11900 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 1 6 11726
70 % 2 20 3064
50 % 11 164 240
40 % 11 166 256
30 % 17 203 147
Entity #4 | Chains: 4
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 23617
95 % 1 4 20153 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 13 5048
70 % 2 13 4992
50 % 9 122 418
40 % 9 123 445
30 % 9 123 443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.