Sequence Similarity Clusters for the Entities in PDB 1FPN

Entity #1 | Chains: 1
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 11205
95 % 1 6 10915
90 % 1 6 10769
70 % 2 20 2866
50 % 2 20 2800
40 % 11 147 267
30 % 11 147 273
Entity #2 | Chains: 2
COAT PROTEIN VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 11411
95 % 1 6 11070
90 % 1 6 10921
70 % 2 20 2883
50 % 10 150 280
40 % 10 150 298
30 % 15 178 162
Entity #3 | Chains: 3
COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 11592
95 % 1 6 11220
90 % 1 6 11063
70 % 2 20 2892
50 % 6 114 398
40 % 11 158 251
30 % 16 187 148
Entity #4 | Chains: 4
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22268
95 % 1 4 19016
90 % 2 13 4751
70 % 2 13 4698
50 % 9 116 386
40 % 9 116 425
30 % 9 116 417

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.