Sequence Similarity Clusters for the Entities in PDB 1FPN

Entity #1 | Chains: 1
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 12798
95 % 1 6 12392 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 1 6 12215
70 % 2 20 3244
50 % 2 20 3171
40 % 11 160 279
30 % 11 160 293
Entity #2 | Chains: 2
COAT PROTEIN VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13021
95 % 1 6 12560 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 1 6 12382
70 % 2 20 3262
50 % 10 160 338
40 % 10 160 353
30 % 16 195 169
Entity #3 | Chains: 3
COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13233
95 % 1 6 12734 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 1 6 12548
70 % 2 20 3275
50 % 11 169 247
40 % 11 171 262
30 % 17 210 153
Entity #4 | Chains: 4
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25309
95 % 1 4 21548 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 13 5468
70 % 2 13 5373
50 % 9 122 452
40 % 9 123 477
30 % 9 123 470

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures