Sequence Similarity Clusters for the Entities in PDB 1FPN

Entity #1 | Chains: 1
COAT PROTEIN VP1 protein, length: 289 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 12106
95 % 1 6 11771
90 % 1 6 11614
70 % 2 20 3084
50 % 2 20 3022
40 % 11 155 276
30 % 11 155 284
Entity #2 | Chains: 2
COAT PROTEIN VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 12324
95 % 1 6 11934
90 % 1 6 11778
70 % 2 20 3098
50 % 10 157 298
40 % 10 157 313
30 % 16 192 165
Entity #3 | Chains: 3
COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 12525
95 % 1 6 12102
90 % 1 6 11937
70 % 2 20 3108
50 % 11 164 242
40 % 11 166 260
30 % 17 205 146
Entity #4 | Chains: 4
COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24067
95 % 1 4 20559
90 % 2 13 5146
70 % 2 13 5093
50 % 9 122 427
40 % 9 123 454
30 % 9 123 453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.