Sequence Similarity Clusters for the Entities in PDB 1FPC

Entity #1 | Chains: L
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 212 336 55
95 % 214 344 70 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 214 344 76
70 % 214 344 90
50 % 214 344 122
40 % 214 344 141
30 % 214 344 153
Entity #2 | Chains: H
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 211 334 56
95 % 236 380 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 238 387 60
70 % 238 411 56
50 % 238 411 95
40 % 1276 1900 4
30 % 1283 1914 7
Entity #3 | Chains: I
Hirudin protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures