Sequence Similarity Clusters for the Entities in PDB 1FPC

Entity #1 | Chains: L
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 213 337 58
95 % 215 345 75 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 215 345 79
70 % 215 345 93
50 % 215 345 127
40 % 215 345 147
30 % 215 345 163
Entity #2 | Chains: H
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 211 334 59
95 % 237 381 61 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 239 388 68
70 % 239 412 73
50 % 239 412 99
40 % 1303 1933 4
30 % 1310 1947 6
Entity #3 | Chains: I
Hirudin protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures