Sequence Similarity Clusters for the Entities in PDB 1FPC

Entity #1 | Chains: L
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 211 334 53
95 % 213 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 213 342 67
70 % 213 342 81
50 % 213 342 112
40 % 213 342 135
30 % 213 342 146
Entity #2 | Chains: H
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 210 332 52
95 % 235 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 237 385 56
70 % 237 409 47
50 % 237 409 85
40 % 1268 1885 4
30 % 1275 1899 7
Entity #3 | Chains: I
Hirudin protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures