Sequence Similarity Clusters for the Entities in PDB 1FPC

Entity #1 | Chains: L
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 211 335 45
95 % 211 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 211 336 66
70 % 211 338 78
50 % 211 338 107
40 % 211 338 131
30 % 211 338 136
Entity #2 | Chains: H
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 190 290 57
95 % 233 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 235 381 39
70 % 235 405 46
50 % 235 405 84
40 % 1157 1698 4
30 % 1245 1848 6
Entity #3 | Chains: I
Hirudin protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures