Sequence Similarity Clusters for the Entities in PDB 1FPC

Entity #1 | Chains: L
thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 211 334 53
95 % 213 342 68 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 213 342 74
70 % 213 342 88
50 % 213 342 117
40 % 213 342 140
30 % 213 342 150
Entity #2 | Chains: H
thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 210 332 54
95 % 235 378 57 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 237 385 57
70 % 237 409 49
50 % 237 409 89
40 % 1275 1897 4
30 % 1282 1911 7
Entity #3 | Chains: I
Hirudin protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures