Sequence Similarity Clusters for the Entities in PDB 1FOR

Entity #1 | Chains: L
IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59097
95 % 6 10 3544 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 44 148 145
70 % 1318 2538 1
50 % 2700 5152 1
40 % 3088 5806 1
30 % 3791 7240 1
Entity #2 | Chains: H
IGG2A-KAPPA 17-IA FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59098
95 % 1 1 48313
90 % 1 1 45867
70 % 1310 2497 2
50 % 2701 5152 1
40 % 3089 5806 1
30 % 3792 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures