Sequence Similarity Clusters for the Entities in PDB 1FOR

Entity #1 | Chains: L
IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61894
95 % 6 10 3607 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 44 148 140
70 % 1244 2392 1
50 % 2541 4843 1
40 % 2541 4843 1
30 % 2905 5705 1
Entity #2 | Chains: H
IGG2A-KAPPA 17-IA FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60909
95 % 1 1 42779
90 % 1 1 40750
70 % 1233 2342 2
50 % 2542 4843 1
40 % 2542 4843 1
30 % 2906 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures