Sequence Similarity Clusters for the Entities in PDB 1FOR

Entity #1 | Chains: L
IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61032
95 % 6 10 3546 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 43 145 142
70 % 1201 2327 1
50 % 2455 4713 1
40 % 2455 4713 1
30 % 2812 5567 1
Entity #2 | Chains: H
IGG2A-KAPPA 17-IA FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60070
95 % 1 1 42204
90 % 1 1 40228
70 % 1192 2280 2
50 % 2456 4713 1
40 % 2456 4713 1
30 % 2813 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.