Sequence Similarity Clusters for the Entities in PDB 1FOR

Entity #1 | Chains: L
IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63050
95 % 6 10 3685 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 44 148 144
70 % 1294 2474 1
50 % 2643 5011 1
40 % 2643 5011 1
30 % 3056 5941 1
Entity #2 | Chains: H
IGG2A-KAPPA 17-IA FAB (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62044
95 % 1 1 43533
90 % 1 1 41436
70 % 1283 2424 2
50 % 2644 5011 1
40 % 2644 5011 1
30 % 3057 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures