Sequence Similarity Clusters for the Entities in PDB 1FOE

Entity #1 | Chains: A,C,E,G
T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18367
95 % 1 1 16550 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.8
PDBFlex
90 % 1 1 16228
70 % 1 1 15149
50 % 1 1 13315
40 % 1 1 11990
30 % 1 1 10385
Entity #2 | Chains: B,D,F,H
RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 14 1732
95 % 35 39 630 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.3
PDBFlex
90 % 37 41 628
70 % 66 79 333
50 % 123 141 192
40 % 124 142 204
30 % 690 797 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures