Sequence Similarity Clusters for the Entities in PDB 1FOE

Entity #1 | Chains: A,C,E,G
T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18134
95 % 1 1 16359 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 1 16035
70 % 1 1 14971
50 % 1 1 13170
40 % 1 1 11865
30 % 1 1 10275
Entity #2 | Chains: B,D,F,H
RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1939
95 % 35 38 651 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.3
PDBFlex
90 % 37 40 626
70 % 66 78 319
50 % 120 137 189
40 % 121 138 205
30 % 670 775 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.