Sequence Similarity Clusters for the Entities in PDB 1FOE

Entity #1 | Chains: A,C,E,G
T-LYMPHOMA INVASION AND METASTASIS INDUCING PROTEIN 1 protein, length: 377 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19466
95 % 1 1 17742 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.8
PDBFlex
90 % 1 1 17309
70 % 1 1 16026
50 % 1 1 14018
40 % 1 1 12530
30 % 1 1 10560
Entity #2 | Chains: B,D,F,H
RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1799
95 % 36 40 625 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.3
PDBFlex
90 % 38 42 623
70 % 68 82 332
50 % 127 145 194
40 % 127 145 210
30 % 734 842 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures