Sequence Similarity Clusters for the Entities in PDB 1FOD

Entity #1 | Chains: 1
FOOT AND MOUTH DISEASE VIRUS protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38342
95 % 3 3 21645
90 % 3 3 20969
70 % 6 13 4672
50 % 6 15 3939
40 % 6 15 3768
30 % 6 15 3479
Entity #2 | Chains: 2
FOOT AND MOUTH DISEASE VIRUS protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25830
95 % 3 5 13424
90 % 3 5 13198
70 % 6 15 4059
50 % 6 15 3940
40 % 6 15 3769
30 % 23 178 165
Entity #3 | Chains: 3
FOOT AND MOUTH DISEASE VIRUS protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25753
95 % 3 5 13409
90 % 3 5 13184
70 % 6 13 4667
50 % 6 15 3936
40 % 8 27 322
30 % 24 189 149
Entity #4 | Chains: 4
FOOT AND MOUTH DISEASE VIRUS protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 14919
95 % 6 13 4813
90 % 6 13 4831
70 % 6 13 4767
50 % 6 13 4586
40 % 6 13 4364
30 % 6 20 670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.