Sequence Similarity Clusters for the Entities in PDB 1FOD

Entity #1 | Chains: 1
FOOT AND MOUTH DISEASE VIRUS protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39165
95 % 3 3 22097
90 % 3 3 21401
70 % 6 13 4787
50 % 6 15 4023
40 % 6 15 3851
30 % 6 15 3548
Entity #2 | Chains: 2
FOOT AND MOUTH DISEASE VIRUS protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26385
95 % 3 5 13740
90 % 3 5 13499
70 % 6 15 4155
50 % 6 15 4024
40 % 6 15 3852
30 % 23 178 170
Entity #3 | Chains: 3
FOOT AND MOUTH DISEASE VIRUS protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26307
95 % 3 5 13723
90 % 3 5 13483
70 % 6 13 4782
50 % 6 15 4020
40 % 8 27 332
30 % 24 189 154
Entity #4 | Chains: 4
FOOT AND MOUTH DISEASE VIRUS protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 15279
95 % 6 13 4937
90 % 6 13 4952
70 % 6 13 4884
50 % 6 13 4694
40 % 6 13 4459
30 % 6 20 682

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.