Sequence Similarity Clusters for the Entities in PDB 1FOD

Entity #1 | Chains: 1
FOOT AND MOUTH DISEASE VIRUS protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 41138
95 % 3 3 23256
90 % 3 3 22496
70 % 7 20 3181
50 % 7 22 2805
40 % 7 22 2758
30 % 7 22 2584
Entity #2 | Chains: 2
FOOT AND MOUTH DISEASE VIRUS protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27758
95 % 4 12 5829 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 12 5844
70 % 7 22 2848
50 % 7 22 2806
40 % 7 22 2759
30 % 25 194 165
Entity #3 | Chains: 3
FOOT AND MOUTH DISEASE VIRUS protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27678
95 % 4 12 5823 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 4 12 5836
70 % 7 22 2336
50 % 7 24 2129
40 % 9 36 322
30 % 26 209 147
Entity #4 | Chains: 4
FOOT AND MOUTH DISEASE VIRUS protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 16115
95 % 7 18 3648 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 7 18 3702
70 % 7 18 3648
50 % 7 18 3544
40 % 7 18 3421
30 % 7 25 666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.