Sequence Similarity Clusters for the Entities in PDB 1FOD

Entity #1 | Chains: 1
FOOT AND MOUTH DISEASE VIRUS protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40620
95 % 3 3 22988 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 22243
70 % 7 20 3136
50 % 7 22 2756
40 % 7 22 2716
30 % 7 22 2549
Entity #2 | Chains: 2
FOOT AND MOUTH DISEASE VIRUS protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27428
95 % 4 12 5742 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 12 5754
70 % 7 22 2798
50 % 7 22 2757
40 % 7 22 2717
30 % 25 194 165
Entity #3 | Chains: 3
FOOT AND MOUTH DISEASE VIRUS protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27348
95 % 4 12 5735 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 4 12 5745
70 % 7 22 2296
50 % 7 24 2093
40 % 9 36 313
30 % 26 208 146
Entity #4 | Chains: 4
FOOT AND MOUTH DISEASE VIRUS protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 15896
95 % 7 18 3596
90 % 7 18 3646
70 % 7 18 3604
50 % 7 18 3504
40 % 7 18 3384
30 % 7 25 662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.