Sequence Similarity Clusters for the Entities in PDB 1FOD

Entity #1 | Chains: 1
FOOT AND MOUTH DISEASE VIRUS protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 42401
95 % 3 3 23969
90 % 3 3 23162
70 % 7 20 3287
50 % 7 22 2894
40 % 7 22 2842
30 % 7 22 2663
Entity #2 | Chains: 2
FOOT AND MOUTH DISEASE VIRUS protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28661
95 % 4 12 6010 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 4 12 6032
70 % 7 22 2939
50 % 7 22 2895
40 % 7 22 2843
30 % 25 195 169
Entity #3 | Chains: 3
FOOT AND MOUTH DISEASE VIRUS protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28582
95 % 4 12 6004 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.2
PDBFlex
90 % 4 12 6024
70 % 7 22 2439
50 % 7 24 2214
40 % 10 36 358
30 % 26 210 153
Entity #4 | Chains: 4
FOOT AND MOUTH DISEASE VIRUS protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 16699
95 % 7 18 3775 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 7 18 3838
70 % 7 18 3783
50 % 7 18 3664
40 % 7 18 3528
30 % 7 25 691

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures