Sequence Similarity Clusters for the Entities in PDB 1FO0

Entity #1 | Chains: H
PROTEIN (ALLOGENEIC H-2KB MHC CLASS I MOLECULE) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 49 347
95 % 44 65 334
90 % 48 70 337
70 % 480 649 7
50 % 481 654 7
40 % 515 701 11
30 % 558 817 14
Entity #2 | Chains: L
PROTEIN (BETA-2 MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 131 92
95 % 120 212 65
90 % 120 212 69
70 % 596 847 5
50 % 606 867 5
40 % 606 867 9
30 % 606 867 13
Entity #3 | Chains: P
NATURALLY PROCESSED OCTAPEPTIDE PBM1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 43267
95 % 1 2 32410
90 % 1 2 31043
70 % 1 2 27754
50 % 1 2 23782
40 % 530 840 5
30 % 596 966 7
Entity #5 | Chains: B
PROTEIN (BM3.3 T CELL RECEPTOR BETA-CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27397
95 % 1 3 22714
90 % 1 3 22001
70 % 1 5 11329
50 % 1 5 10162
40 % 1 5 9206
30 % 597 966 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.