Sequence Similarity Clusters for the Entities in PDB 1FO0

Entity #1 | Chains: H
PROTEIN (ALLOGENEIC H-2KB MHC CLASS I MOLECULE) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 49 396
95 % 44 65 354 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 48 70 357
70 % 508 684 6
50 % 509 689 6
40 % 545 739 10
30 % 588 856 15
Entity #2 | Chains: L
PROTEIN (BETA-2 MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 133 95
95 % 123 215 64 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 123 215 68
70 % 619 875 4
50 % 631 897 4
40 % 631 897 9
30 % 631 897 14
Entity #3 | Chains: P
NATURALLY PROCESSED OCTAPEPTIDE PBM1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45152
95 % 1 2 33817 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 32345
70 % 1 2 28863
50 % 1 2 24682
40 % 556 887 5
30 % 622 1013 7
Entity #5 | Chains: B
PROTEIN (BM3.3 T CELL RECEPTOR BETA-CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28605
95 % 1 3 23712
90 % 1 3 22952
70 % 1 5 11854
50 % 1 5 10584
40 % 1 5 9597
30 % 623 1013 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.