Sequence Similarity Clusters for the Entities in PDB 1FO0

Entity #1 | Chains: H
PROTEIN (ALLOGENEIC H-2KB MHC CLASS I MOLECULE) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 49 370
95 % 44 65 345
90 % 48 70 349
70 % 496 668 7
50 % 497 673 7
40 % 533 723 10
30 % 576 840 15
Entity #2 | Chains: L
PROTEIN (BETA-2 MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 133 95
95 % 123 215 64
90 % 123 215 68
70 % 608 861 5
50 % 620 883 5
40 % 620 883 9
30 % 620 883 14
Entity #3 | Chains: P
NATURALLY PROCESSED OCTAPEPTIDE PBM1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 44178
95 % 1 2 33081
90 % 1 2 31664
70 % 1 2 28270
50 % 1 2 24195
40 % 540 858 5
30 % 606 984 7
Entity #5 | Chains: B
PROTEIN (BM3.3 T CELL RECEPTOR BETA-CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 27980
95 % 1 3 23193
90 % 1 3 22460
70 % 1 5 11586
50 % 1 5 10382
40 % 1 5 9407
30 % 607 984 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.