Sequence Similarity Clusters for the Entities in PDB 1FO0

Entity #1 | Chains: H
PROTEIN (ALLOGENEIC H-2KB MHC CLASS I MOLECULE) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 49 420
95 % 44 65 375 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 48 70 369
70 % 526 719 6
50 % 527 724 6
40 % 564 775 10
30 % 613 899 15
Entity #2 | Chains: L
PROTEIN (BETA-2 MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 135 96
95 % 132 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 132 228 65
70 % 641 916 4
50 % 653 938 3
40 % 653 938 7
30 % 653 938 12
Entity #3 | Chains: P
NATURALLY PROCESSED OCTAPEPTIDE PBM1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 46402
95 % 1 2 34750 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 33194
70 % 1 2 29522
50 % 1 2 25195
40 % 587 933 5
30 % 655 1061 7
Entity #5 | Chains: B
PROTEIN (BM3.3 T CELL RECEPTOR BETA-CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29486
95 % 1 3 24468 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 1 3 23663
70 % 1 5 12223
50 % 1 5 10900
40 % 1 5 9883
30 % 656 1061 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures