Sequence Similarity Clusters for the Entities in PDB 1FO0

Entity #1 | Chains: H
PROTEIN (ALLOGENEIC H-2KB MHC CLASS I MOLECULE) protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 49 405
95 % 44 65 360 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 48 70 363
70 % 518 705 6
50 % 519 710 6
40 % 556 761 10
30 % 602 881 15
Entity #2 | Chains: L
PROTEIN (BETA-2 MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 133 95
95 % 129 223 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 129 223 66
70 % 631 898 4
50 % 643 920 3
40 % 643 920 8
30 % 643 920 12
Entity #3 | Chains: P
NATURALLY PROCESSED OCTAPEPTIDE PBM1 protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (BM3.3 T CELL RECEPTOR ALPHA-CHAIN) protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45821
95 % 1 2 34315 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 32805
70 % 1 2 29214
50 % 1 2 24937
40 % 576 916 5
30 % 642 1042 7
Entity #5 | Chains: B
PROTEIN (BM3.3 T CELL RECEPTOR BETA-CHAIN) protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29125
95 % 1 3 24171 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 1 3 23387
70 % 1 5 12087
50 % 1 5 10779
40 % 1 5 9777
30 % 643 1042 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.