Sequence Similarity Clusters for the Entities in PDB 1FNX

Entity #1 | Chains: R
AU-RICH RNA ELEMENT rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: H
HU ANTIGEN C protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64935
95 % 1 1 45159
90 % 3 3 23546
70 % 5 5 12172
50 % 5 5 10850
40 % 8 8 4753
30 % 13 13 3254

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures