Sequence Similarity Clusters for the Entities in PDB 1FNT

Entity #1 | Chains: A,O
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 13
95 % 239 252 25 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 239 252 26
70 % 239 252 35
50 % 256 281 48
40 % 256 282 56
30 % 1796 1996 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 16
95 % 239 252 30 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 239 252 31
70 % 239 252 40
50 % 256 281 49
40 % 256 282 57
30 % 256 282 77
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 238 251 17
95 % 238 251 31 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 238 251 32
70 % 238 251 41
50 % 238 251 79
40 % 255 281 60
30 % 255 281 78
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 5163
95 % 198 199 58 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 198 199 62
70 % 250 254 27
50 % 250 255 69
40 % 250 255 89
30 % 530 559 13
Entity #13 | Chains: M,a
PROTEASOME COMPONENT C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 219 25
95 % 239 252 27 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 239 252 28
70 % 239 252 37
50 % 239 252 77
40 % 256 281 59
30 % 256 282 76
Entity #14 | Chains: N,b
PROTEASOME COMPONENT PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 9
95 % 239 252 20 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 239 252 22
70 % 239 252 31
50 % 239 252 76
40 % 256 271 66
30 % 256 271 83
Entity #15 | Chains: c,d,e,f,g,h,i,j,k,l,m,n,o,p
PROTEASOME ACTIVATOR PROTEIN PA26 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 4019
95 % 7 9 606 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 2.7
PDBFlex
90 % 7 9 633
70 % 7 9 678
50 % 7 9 726
40 % 7 9 755
30 % 7 9 755
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 14
95 % 239 252 26 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 239 252 27
70 % 239 252 36
50 % 256 282 45
40 % 1031 1148 3
30 % 1797 1996 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 11
95 % 239 252 23 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 239 252 24
70 % 239 252 33
50 % 256 282 44
40 % 1032 1148 3
30 % 1798 1996 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 12
95 % 239 252 24 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 239 252 25
70 % 239 252 34
50 % 256 282 47
40 % 1033 1148 3
30 % 1799 1996 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 10
95 % 239 252 21 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 240 253 20
70 % 240 253 28
50 % 257 283 42
40 % 1034 1148 3
30 % 1800 1996 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 250 18
95 % 239 252 28 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 239 252 29
70 % 239 252 38
50 % 256 282 46
40 % 256 282 58
30 % 1801 1996 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C1 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 203 216 26
95 % 203 216 36 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 203 216 41
70 % 203 216 49
50 % 203 216 89
40 % 203 216 111
30 % 1802 1996 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 15
95 % 239 252 29 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 239 252 30
70 % 239 252 39
50 % 256 271 53
40 % 256 271 67
30 % 531 559 13
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 216 217 24
95 % 239 252 22 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 239 252 23
70 % 239 252 32
50 % 256 282 43
40 % 256 282 55
30 % 256 282 75

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures