Sequence Similarity Clusters for the Entities in PDB 1FNT

Entity #1 | Chains: A,O
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 21
95 % 239 252 32 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 239 252 34
70 % 239 252 44
50 % 256 285 63
40 % 256 286 78
30 % 1796 2025 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 18
95 % 239 252 27 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 239 252 29
70 % 239 252 40
50 % 256 285 60
40 % 256 286 76
30 % 256 286 95
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 238 251 22
95 % 238 251 33 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 238 251 35
70 % 238 251 45
50 % 238 251 83
40 % 255 285 82
30 % 255 285 100
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 166 167 61
95 % 198 199 60 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 198 199 64
70 % 250 254 29
50 % 250 255 77
40 % 250 255 99
30 % 530 562 10
Entity #13 | Chains: M,a
PROTEASOME COMPONENT C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 13
95 % 239 252 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 239 252 31
70 % 239 252 35
50 % 239 252 81
40 % 256 285 81
30 % 256 286 94
Entity #14 | Chains: N,b
PROTEASOME COMPONENT PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 17
95 % 239 252 25 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 239 252 27
70 % 239 252 38
50 % 239 252 82
40 % 256 271 91
30 % 256 271 105
Entity #15 | Chains: c,d,e,f,g,h,i,j,k,l,m,n,o,p
PROTEASOME ACTIVATOR PROTEIN PA26 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 4583
95 % 7 9 617 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 2.7
PDBFlex
90 % 7 9 642
70 % 7 9 693
50 % 7 9 746
40 % 7 9 780
30 % 7 9 781
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 19
95 % 239 252 31 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 239 252 33
70 % 239 252 43
50 % 256 286 59
40 % 1031 1165 3
30 % 1797 2025 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 20
95 % 239 252 30 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 239 252 32
70 % 239 252 42
50 % 256 286 57
40 % 1032 1165 3
30 % 1798 2025 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 15
95 % 239 252 24 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 239 252 26
70 % 239 252 37
50 % 256 286 61
40 % 1033 1165 3
30 % 1799 2025 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 16
95 % 240 253 22 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 240 253 24
70 % 240 253 34
50 % 257 287 55
40 % 1034 1165 3
30 % 1800 2025 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 250 23
95 % 239 252 26 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 239 252 28
70 % 239 252 39
50 % 256 286 62
40 % 256 286 83
30 % 1801 2025 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C1 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 203 216 45
95 % 203 216 55 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 203 216 60
70 % 203 216 72
50 % 256 286 43
40 % 256 286 61
30 % 1802 2025 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 14
95 % 239 252 23 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 239 252 25
70 % 239 252 36
50 % 256 271 69
40 % 256 271 90
30 % 531 562 10
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 218 219 42
95 % 239 252 28 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 239 252 30
70 % 239 252 41
50 % 256 286 58
40 % 256 286 77
30 % 256 286 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures