Sequence Similarity Clusters for the Entities in PDB 1FNT

Entity #1 | Chains: A,O
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 13
95 % 239 252 23 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 239 252 24
70 % 239 252 33
50 % 256 280 47
40 % 256 281 53
30 % 1796 1989 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 16
95 % 239 252 28 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 239 252 29
70 % 239 252 38
50 % 256 280 48
40 % 256 281 54
30 % 256 281 71
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 238 251 17
95 % 238 251 29 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 238 251 30
70 % 238 251 39
50 % 238 251 71
40 % 255 280 57
30 % 255 280 74
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 4984
95 % 198 199 57 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 198 199 62
70 % 250 253 27
50 % 250 254 65
40 % 250 254 84
30 % 530 557 12
Entity #13 | Chains: M,a
PROTEASOME COMPONENT C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 219 24
95 % 239 252 25 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 239 252 26
70 % 239 252 35
50 % 239 252 70
40 % 256 280 56
30 % 256 281 70
Entity #14 | Chains: N,b
PROTEASOME COMPONENT PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 9
95 % 239 252 18 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 239 252 20
70 % 239 252 29
50 % 239 252 69
40 % 256 270 61
30 % 256 270 78
Entity #15 | Chains: c,d,e,f,g,h,i,j,k,l,m,n,o,p
PROTEASOME ACTIVATOR PROTEIN PA26 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 3861
95 % 7 9 586 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 2.7
PDBFlex
90 % 7 9 614
70 % 7 9 652
50 % 7 9 699
40 % 7 9 730
30 % 7 9 727
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 14
95 % 239 252 24 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 239 252 25
70 % 239 252 34
50 % 256 281 44
40 % 1031 1144 3
30 % 1797 1989 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 11
95 % 239 252 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.4
PDBFlex
90 % 239 252 22
70 % 239 252 31
50 % 256 281 43
40 % 1032 1144 3
30 % 1798 1989 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 12
95 % 239 252 22 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 239 252 23
70 % 239 252 32
50 % 256 281 46
40 % 1033 1144 3
30 % 1799 1989 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 10
95 % 239 252 19 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 240 253 19
70 % 240 253 28
50 % 257 282 39
40 % 1034 1144 3
30 % 1800 1989 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 237 250 18
95 % 239 252 26 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 239 252 27
70 % 239 252 36
50 % 256 281 45
40 % 256 281 55
30 % 1801 1989 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C1 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 203 216 25
95 % 203 216 36 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 203 216 39
70 % 203 216 49
50 % 203 216 86
40 % 203 216 107
30 % 1802 1989 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 239 252 15
95 % 239 252 27 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 239 252 28
70 % 239 252 37
50 % 256 270 50
40 % 256 270 62
30 % 531 557 12
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 216 217 23
95 % 239 252 20 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 239 252 21
70 % 239 252 30
50 % 256 281 41
40 % 256 281 51
30 % 256 281 69

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.