Sequence Similarity Clusters for the Entities in PDB 1FNT

Entity #1 | Chains: A,O
PROTEASOME COMPONENT C7-ALPHA protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 13
95 % 239 252 22
90 % 239 252 23
70 % 239 252 33
50 % 256 279 46
40 % 256 280 50
30 % 1796 1978 3
Entity #10 | Chains: J,X
PROTEASOME COMPONENT PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 16
95 % 239 252 27
90 % 239 252 28
70 % 239 252 38
50 % 256 279 47
40 % 256 280 51
30 % 256 280 69
Entity #11 | Chains: K,Y
PROTEASOME COMPONENT C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 238 251 17
95 % 238 251 28
90 % 238 251 29
70 % 238 251 39
50 % 238 251 64
40 % 255 279 55
30 % 255 279 70
Entity #12 | Chains: L,Z
PROTEASOME COMPONENT PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 4796
95 % 198 199 56
90 % 198 199 62
70 % 250 252 27
50 % 250 253 55
40 % 250 253 67
30 % 530 554 13
Entity #13 | Chains: M,a
PROTEASOME COMPONENT C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 206 219 24
95 % 239 252 24
90 % 239 252 25
70 % 239 252 35
50 % 239 252 61
40 % 256 279 54
30 % 256 280 68
Entity #14 | Chains: N,b
PROTEASOME COMPONENT PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 9
95 % 239 252 17
90 % 239 252 19
70 % 239 252 29
50 % 239 252 60
40 % 256 270 58
30 % 256 270 75
Entity #15 | Chains: c,d,e,f,g,h,i,j,k,l,m,n,o,p
PROTEASOME ACTIVATOR PROTEIN PA26 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 3729
95 % 7 9 545
90 % 7 9 573
70 % 7 9 615
50 % 7 9 658
40 % 7 9 697
30 % 7 9 694
Entity #2 | Chains: B,P
PROTEASOME COMPONENT Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 14
95 % 239 252 23
90 % 239 252 24
70 % 239 252 34
50 % 256 280 42
40 % 1031 1137 3
30 % 1797 1978 3
Entity #3 | Chains: C,Q
PROTEASOME COMPONENT Y13 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 11
95 % 239 252 20
90 % 239 252 21
70 % 239 252 31
50 % 256 280 41
40 % 1032 1137 3
30 % 1798 1978 3
Entity #4 | Chains: D,R
PROTEASOME COMPONENT PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 12
95 % 239 252 21
90 % 239 252 22
70 % 239 252 32
50 % 256 279 45
40 % 1033 1137 3
30 % 1799 1978 3
Entity #5 | Chains: E,S
PROTEASOME COMPONENT PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 10
95 % 239 252 18
90 % 240 253 18
70 % 240 253 28
50 % 257 281 39
40 % 1034 1137 3
30 % 1800 1978 3
Entity #6 | Chains: F,T
PROTEASOME COMPONENT PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 237 250 18
95 % 239 252 25
90 % 239 252 26
70 % 239 252 36
50 % 256 279 44
40 % 256 279 53
30 % 1801 1978 3
Entity #7 | Chains: G,U
PROTEASOME COMPONENT C1 protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 216 25
95 % 203 216 35
90 % 203 216 39
70 % 203 216 50
50 % 203 216 86
40 % 203 216 105
30 % 1802 1978 3
Entity #8 | Chains: H,V
PROTEASOME COMPONENT PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 239 252 15
95 % 239 252 26
90 % 239 252 27
70 % 239 252 37
50 % 256 270 48
40 % 256 270 59
30 % 531 554 13
Entity #9 | Chains: I,W
PROTEASOME COMPONENT PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 216 217 23
95 % 239 252 19
90 % 239 252 20
70 % 239 252 30
50 % 256 280 40
40 % 256 280 49
30 % 256 280 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.