Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32181
95 % 9 54 599 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 430
70 % 458 2637 1
50 % 944 5362 1
40 % 1140 6051 1
30 % 1388 7514 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58064
95 % 1 2 31657 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 11 6552
70 % 461 2600 2
50 % 945 5362 1
40 % 1141 6051 1
30 % 1389 7514 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21784
95 % 2 14 3822 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3887
70 % 2 15 3597
50 % 2 15 3499
40 % 2 15 3377
30 % 2 15 3116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IJB 1 A von Willebrand factor A1 domain 9606
2 1FNS 3 A VON WILLEBRAND FACTOR A1 DOMAIN RESIDUES 507 - 702, OR GLYCOPROTEIN IBA (A\:ALPHA) BINDING DOMAIN 9606
3 4C2A 1 A VON WILLEBRAND FACTOR RESIDUES 1264-1471 9606
4 4C29 1 A, B VON WILLEBRAND FACTOR HIGH AFFINITY MUTANT OF A1 RESIDUES 1264-1471 9606
5 1OAK 3 A VON WILLEBRAND FACTOR A1 DOMAIN RESIDUES 507 - 702, OR GLYCOPROTEIN IBA (A\:ALPHA) BINDING DOMAIN 9606
6 1AUQ 1 A A1 DOMAIN OF VON WILLEBRAND FACTOR A1 9606
7 1SQ0 1 A Von Willebrand factor (vWF) [Contains: Von Willebrand antigen II] A1 9606
8 3HXO 1 A von Willebrand factor von Willebrand factor (VWF) A1 Domain (residues 1260-1468) 9606
9 1IJK 1 A von Willebrand factor A1 domain 9606
10 1UEX 3 C von Willebrand Factor A1 domain 9606
11 3HXQ 1 A von Willebrand Factor von Willebrand factor (VWF) A1 Domain (residues 1260-1468) 9606
12 1U0N 1 A Von Willebrand factor VWFA 1 9606
13 4C2B 1 A, C, E, G VON WILLEBRAND FACTOR HIGH AFFINITY MUTANT OF A1 1264-1468 9606
14 1M10 1 A von Willebrand Factor A1 domain 9606