Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41057
95 % 9 54 563 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 374
70 % 393 2362 1
50 % 806 4781 1
40 % 806 4781 1
30 % 875 5635 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59971
95 % 1 2 30758 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 9 7771
70 % 393 2311 2
50 % 807 4781 1
40 % 807 4781 1
30 % 876 5635 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28125
95 % 2 14 3575 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3629
70 % 2 15 3338
50 % 2 15 3250
40 % 2 15 3160
30 % 2 15 2967

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IJB 1 A von Willebrand factor A1 domain 9606
2 1FNS 3 A VON WILLEBRAND FACTOR A1 DOMAIN RESIDUES 507 - 702, OR GLYCOPROTEIN IBA (A\:ALPHA) BINDING DOMAIN 9606
3 4C2A 1 A VON WILLEBRAND FACTOR RESIDUES 1264-1471 9606
4 4C29 1 A, B VON WILLEBRAND FACTOR HIGH AFFINITY MUTANT OF A1 RESIDUES 1264-1471 9606
5 1OAK 3 A VON WILLEBRAND FACTOR A1 DOMAIN RESIDUES 507 - 702, OR GLYCOPROTEIN IBA (A\:ALPHA) BINDING DOMAIN 9606
6 1AUQ 1 A A1 DOMAIN OF VON WILLEBRAND FACTOR A1 9606
7 1SQ0 1 A Von Willebrand factor (vWF) [Contains: Von Willebrand antigen II] A1 9606
8 3HXO 1 A von Willebrand factor von Willebrand factor (VWF) A1 Domain (residues 1260-1468) 9606
9 1IJK 1 A von Willebrand factor A1 domain 9606
10 1UEX 3 C von Willebrand Factor A1 domain 9606
11 1U0O 3 C von Willebrand factor VWF A1 10090
12 3HXQ 1 A von Willebrand Factor von Willebrand factor (VWF) A1 Domain (residues 1260-1468) 9606
13 1U0N 1 A Von Willebrand factor VWFA 1 9606
14 4C2B 1 A, C, E, G VON WILLEBRAND FACTOR HIGH AFFINITY MUTANT OF A1 1264-1468 9606
15 1M10 1 A von Willebrand Factor A1 domain 9606