Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31317
95 % 9 54 585 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 417
70 % 447 2576 1
50 % 918 5225 1
40 % 1109 5883 1
30 % 1353 7321 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56791
95 % 1 2 30827 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 11 6373
70 % 448 2532 2
50 % 919 5225 1
40 % 1110 5883 1
30 % 1354 7321 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21157
95 % 2 14 3706 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3776
70 % 2 15 3495
50 % 2 15 3412
40 % 2 15 3288
30 % 2 15 3041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IJB 1 A von Willebrand factor A1 domain 9606
2 1FNS 3 A VON WILLEBRAND FACTOR A1 DOMAIN RESIDUES 507 - 702, OR GLYCOPROTEIN IBA (A\:ALPHA) BINDING DOMAIN 9606
3 4C2A 1 A VON WILLEBRAND FACTOR RESIDUES 1264-1471 9606
4 4C29 1 A, B VON WILLEBRAND FACTOR HIGH AFFINITY MUTANT OF A1 RESIDUES 1264-1471 9606
5 1OAK 3 A VON WILLEBRAND FACTOR A1 DOMAIN RESIDUES 507 - 702, OR GLYCOPROTEIN IBA (A\:ALPHA) BINDING DOMAIN 9606
6 1AUQ 1 A A1 DOMAIN OF VON WILLEBRAND FACTOR A1 9606
7 1SQ0 1 A Von Willebrand factor (vWF) [Contains: Von Willebrand antigen II] A1 9606
8 3HXO 1 A von Willebrand factor von Willebrand factor (VWF) A1 Domain (residues 1260-1468) 9606
9 1IJK 1 A von Willebrand factor A1 domain 9606
10 1UEX 3 C von Willebrand Factor A1 domain 9606
11 1U0O 3 C von Willebrand factor VWF A1 10090
12 3HXQ 1 A von Willebrand Factor von Willebrand factor (VWF) A1 Domain (residues 1260-1468) 9606
13 1U0N 1 A Von Willebrand factor VWFA 1 9606
14 4C2B 1 A, C, E, G VON WILLEBRAND FACTOR HIGH AFFINITY MUTANT OF A1 1264-1468 9606
15 1M10 1 A von Willebrand Factor A1 domain 9606