Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31317
95 % 9 54 585 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 417
70 % 447 2576 1
50 % 918 5225 1
40 % 1109 5883 1
30 % 1353 7321 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56791
95 % 1 2 30827 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 11 6373
70 % 448 2532 2
50 % 919 5225 1
40 % 1110 5883 1
30 % 1354 7321 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21157
95 % 2 14 3706 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3776
70 % 2 15 3495
50 % 2 15 3412
40 % 2 15 3288
30 % 2 15 3041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FNS 2 H IMMUNOGLOBULIN NMC-4 IGG1 FAB FRAGMENT, HEAVY CHAIN 10090
2 5D96 3 C, J Heavy chain of Fab fragment from an antibody targeting mouse and human QSOX1 10090
3 1OAK 2 H NMC-4 IGG1 THE ANTIBODY HEAVY CHAIN CONSISTS OF TWO SEGMENTS, H1 AND H2, BOTH LABELED CHAIN H IN THIS ENTRY FAB FRAGMENT, AN ANTI VON WILLEBRAND FACTOR (VWF) A1 DOMAIN 10090
4 1GIG 2 H IGG1-KAPPA HC19 FAB (HEAVY CHAIN) 10090
5 1CIC 4 D PROTEIN (IG HEAVY CHAIN V REGIONS) FAB IMMUNOGLOBULIN FRAGMENT 10090
6 1FDL 2 H IGG1-KAPPA D1.3 FAB (HEAVY CHAIN) 10090
7 2VIS 2 B IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
8 2VIT 2 B IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
9 2VIR 2 B IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
10 4ZXB 1 A Fab 83-7 heavy chain 10090
11 6BDZ 2 H 11G2 Fab Heavy Chain 10090