Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42255
95 % 9 54 579 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 398
70 % 430 2474 1
50 % 881 5011 1
40 % 881 5011 1
30 % 989 5941 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61589
95 % 1 2 31582 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 11 6011
70 % 430 2424 2
50 % 882 5011 1
40 % 882 5011 1
30 % 990 5941 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28988
95 % 2 14 3688 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3750
70 % 2 15 3447
50 % 2 15 3364
40 % 2 15 3263
30 % 2 15 3062

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FNS 2 H IMMUNOGLOBULIN NMC-4 IGG1 FAB FRAGMENT, HEAVY CHAIN 10090
2 5D96 3 C, J Heavy chain of Fab fragment from an antibody targeting mouse and human QSOX1 10090
3 1OAK 2 H NMC-4 IGG1 THE ANTIBODY HEAVY CHAIN CONSISTS OF TWO SEGMENTS, H1 AND H2, BOTH LABELED CHAIN H IN THIS ENTRY FAB FRAGMENT, AN ANTI VON WILLEBRAND FACTOR (VWF) A1 DOMAIN 10090
4 1GIG 2 H IGG1-KAPPA HC19 FAB (HEAVY CHAIN) 10090
5 1CIC 4 D PROTEIN (IG HEAVY CHAIN V REGIONS) FAB IMMUNOGLOBULIN FRAGMENT 10090
6 1FDL 2 H IGG1-KAPPA D1.3 FAB (HEAVY CHAIN) 10090
7 2VIS 2 B IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
8 2VIT 2 B IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
9 2VIR 2 B IMMUNOGLOBULIN (IGG1, LAMBDA) FAB FRAGMENT 10090
10 4ZXB 1 A Fab 83-7 heavy chain 10090
11 6BDZ 2 H 11G2 Fab Heavy Chain 10090