Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41057
95 % 9 54 563 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 374
70 % 393 2362 1
50 % 806 4781 1
40 % 806 4781 1
30 % 875 5635 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59971
95 % 1 2 30758 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 9 7771
70 % 393 2311 2
50 % 807 4781 1
40 % 807 4781 1
30 % 876 5635 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28125
95 % 2 14 3575 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3629
70 % 2 15 3338
50 % 2 15 3250
40 % 2 15 3160
30 % 2 15 2967

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2XKN 1 A, C ANTI-EGFR ANTIBODY 7A7 FAB FRAGMENT LIGHT CHAIN (IGG1), RESIDUES 1-223 10090
2 3WII 1 L, M anti-human ROBO1 antibody B2212A Fab light chain 10090
3 4POZ 1 C light chain of Fab fragment of 10B9 antibody 10090
4 3WIH 2 L, M anti-human ROBO1 antibody B2212A Fab light chain 10090
5 4Z8F 2 L S1-15 Fab (IgG2b kappa) light chain 10090
6 4Z95 2 L S1-15 Fab (IgG2b) light chain 10090
7 5I30 1 L Fab PL-2 light chain 10090
8 1JFQ 1 L ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY LIGHT CHAIN 10090
9 1FNS 1 L IMMUNOGLOBULIN NMC-4 IGG1 FAB FRAGMENT, LIGHT CHAIN 10090
10 6FAB 1 L IGG1-KAPPA 36-71 FAB (LIGHT CHAIN) 10090
11 4ODT 2 L S1-15 Fab (IgG2b kappa) light chain 10090
12 4UIK 2 L FAB 314.1 FAB, LIGHT CHAIN, RESIDUES 1 215 10090
13 4ODV 1 L A6 Fab (IgG2b kappa) light chain 10090
14 1OAK 1 L NMC-4 IGG1 THE ANTIBODY HEAVY CHAIN CONSISTS OF TWO SEGMENTS, H1 AND H2, BOTH LABELED CHAIN H IN THIS ENTRY FAB FRAGMENT, AN ANTI VON WILLEBRAND FACTOR (VWF) A1 DOMAIN 10090
15 4ODU 1 B, L S1-15 Fab (IgG2b kappa) light chain 10090
16 1IKF 1 L IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) 9606
17 4UIN 2 L FAB 314.3 LIGHT CHAIN, RESIDUES 1-214 10090
18 1MAM 1 L IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) 10090
19 5VGA 1 A Fab 36-65 light chain 10090
20 4EDX 2 A, L light chain of FAB of murine anti-NGF 10090
21 3CFD 1 A, L PURPLE-FLUORESCENT ANTIBODY EP2-25C10-KAPPA LIGHT CHAIN FAB 10090
22 4BH8 1 A ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65 ANTIGEN BINDING FRAGMENT 10090
23 1FAI 1 L IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) 10090
24 4ZPT 2 B, L D12 Fab Light chain 10090
25 2F19 1 L IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) 10090
26 5SZF 1 L 2A10 antibody FAB fragment light chain 9606
27 5DO2 3 D, L 4C2 light chain 10090
28 4PP2 1 A, C light chain of Fab fragment of 10B9 antibody 10090
29 5VCO 1 A, C LIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY 10090
30 1GHF 1 L ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT 10090
31 2A6I 1 A Germline antibody 36-65 Fab light chain Fab 10090
32 4UIM 2 B, D, F, L FAB 314.3 LIGHT CHAIN, RESIDUES 1-214 10090
33 1FBI 1 L, P IGG1 F9.13.7 FAB (LIGHT CHAIN) 10090
34 2A6J 1 A, L Germline antibody 36-65 Fab light chain Fab 10090
35 4ODW 1 B, L A6 Fab (IgG2b kappa) light chain 10090
36 3CFE 1 A, L PURPLE-FLUORESCENT ANTIBODY EP2-25C10-KAPPA LIGHT CHAIN FAB 10090
37 1R0A 5 L monoclonal antibody (light chain) fab 28 10090
38 4BH7 1 A ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65 ANTIGEN BINDING FRAGMENT 10090
39 2V7H 1 A, L MONOCLONAL ANTIBODY MONOCLONAL ANTIBODY AGAINST ALPHA-D-MANNOPYRANOSIDE FAB FRAGMENT LIGHT CHAIN 10090
40 2A6D 1 A, L Germline antibody 36-65 Fab light chain Fab 10090
41 5VCN 2 C, E LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8 10090
42 4PP1 2 C, E light chain of Fab fragment of mAb 5H8 10090
43 5T0Y 1 B, G, L 2A10 FAB fragment light chain 10090
44 2A6K 1 A, L Germline antibody 36-65 Fab light chain Fab 10090
45 4ZPV 2 B, L D12 Fab light chain 10090
46 1N6Q 5 L Monoclonal Antibody (Light Chain) FAB 28 10090
47 3KLH 3 C monoclonal antibody, heavy chain 10090
48 1YNT 1 A, C 4F11E12 Fab variable light chain region Fab fragment 10090
49 4UIL 2 L FAB 314.1 FAB, LIGHT CHAIN, RESIDUES 1-213 10090
50 1N5Y 5 L monoclonal antibody (light chain) FAB 28 10090
51 1T03 5 L monoclonal antibody light chain Fab light chain domain 10090
52 2ZJS 4 L Fab56 (light chain) 10090
53 4O02 3 L 17E6 light chain 10090
54 2VWE 2 C, J ANTI-VEGF-B MONOCLONAL ANTIBODY 10090