Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31907
95 % 9 54 596 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 427
70 % 456 2621 1
50 % 939 5323 1
40 % 1135 6003 1
30 % 1383 7460 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57573
95 % 1 2 31360 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 11 6492
70 % 458 2580 2
50 % 940 5323 1
40 % 1136 6003 1
30 % 1384 7460 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 21604
95 % 2 14 3795 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 3862
70 % 2 15 3577
50 % 2 15 3486
40 % 2 15 3361
30 % 2 15 3103

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2XKN 1 A, C ANTI-EGFR ANTIBODY 7A7 FAB FRAGMENT LIGHT CHAIN (IGG1), RESIDUES 1-223 10090
2 3WII 1 L, M anti-human ROBO1 antibody B2212A Fab light chain 10090
3 4POZ 1 C light chain of Fab fragment of 10B9 antibody 10090
4 3WIH 2 L, M anti-human ROBO1 antibody B2212A Fab light chain 10090
5 4Z8F 2 L S1-15 Fab (IgG2b kappa) light chain 10090
6 3HNT 2 L CS-35 Fab Light Chain Light Chain 10090
7 4Z95 2 L S1-15 Fab (IgG2b) light chain 10090
8 5I30 1 L Fab PL-2 light chain 10090
9 1JFQ 1 L ANTIGEN-BINDING FRAGMENT OF ANTI-PHENYLARSONATE ANTIBODY LIGHT CHAIN 10090
10 1FNS 1 L IMMUNOGLOBULIN NMC-4 IGG1 FAB FRAGMENT, LIGHT CHAIN 10090
11 3HNS 2 L CS-35 Fab Light Chain Light Chain 10090
12 3HNV 2 L CS-35 Fab Light Chain Light Chain 10090
13 6FAB 1 L IGG1-KAPPA 36-71 FAB (LIGHT CHAIN) 10090
14 4ODT 2 L S1-15 Fab (IgG2b kappa) light chain 10090
15 4UIK 2 L FAB 314.1 FAB, LIGHT CHAIN, RESIDUES 1 215 10090
16 1E4W 2 L TAB2 MURINE FAB-FRAGMENT IG KAPPA LIGHT CHAIN 10090
17 1E4X 3 L, M TAB2 MURINE FAB-FRAGMENT IG KAPPA LIGHT CHAIN 10090
18 1EMT 1 L IGG ANTIBODY (LIGHT CHAIN) FAB FRAGMENT 10090
19 1FE8 3 L, M, N IMMUNOGLOBULIN IGG RU5 FAB FRAGMENT LIGHT CHAIN 10090
20 4ODV 1 L A6 Fab (IgG2b kappa) light chain 10090
21 1OAK 1 L NMC-4 IGG1 THE ANTIBODY HEAVY CHAIN CONSISTS OF TWO SEGMENTS, H1 AND H2, BOTH LABELED CHAIN H IN THIS ENTRY FAB FRAGMENT, AN ANTI VON WILLEBRAND FACTOR (VWF) A1 DOMAIN 10090
22 4ODU 1 B, L S1-15 Fab (IgG2b kappa) light chain 10090
23 1IKF 1 L IGG1-KAPPA R45-45-11 FAB (LIGHT CHAIN) 9606
24 4UIN 2 L FAB 314.3 LIGHT CHAIN, RESIDUES 1-214 10090
25 1MAM 1 L IGG2B-KAPPA YST9.1 FAB (LIGHT CHAIN) 10090
26 5VGA 1 A Fab 36-65 light chain 10090
27 4EDX 2 A, L light chain of FAB of murine anti-NGF 10090
28 3CFD 1 A, L PURPLE-FLUORESCENT ANTIBODY EP2-25C10-KAPPA LIGHT CHAIN FAB 10090
29 3CMO 1 L, X Fab light chain 10090
30 4BH8 1 A ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65 ANTIGEN BINDING FRAGMENT 10090
31 1FAI 1 L IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) 10090
32 4ZPT 2 B, L D12 Fab Light chain 10090
33 2F19 1 L IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) 10090
34 5SZF 1 L 2A10 antibody FAB fragment light chain 9606
35 5DO2 3 D, L 4C2 light chain 10090
36 4PP2 1 A, C light chain of Fab fragment of 10B9 antibody 10090
37 5VCO 1 A, C LIGHT CHAIN OF FAB FRAGMENT OF 10B9 ANTIBODY 10090
38 1GHF 1 L ANTI-ANTI-IDIOTYPE GH1002 FAB FRAGMENT 10090
39 2A6I 1 A Germline antibody 36-65 Fab light chain Fab 10090
40 3RA7 1 L, M Fab fragment, light chain 10090
41 4UIM 2 B, D, F, L FAB 314.3 LIGHT CHAIN, RESIDUES 1-214 10090
42 1FBI 1 L, P IGG1 F9.13.7 FAB (LIGHT CHAIN) 10090
43 2A6J 1 A, L Germline antibody 36-65 Fab light chain Fab 10090
44 4ODW 1 B, L A6 Fab (IgG2b kappa) light chain 10090
45 3CFE 1 A, L PURPLE-FLUORESCENT ANTIBODY EP2-25C10-KAPPA LIGHT CHAIN FAB 10090
46 1R0A 5 L monoclonal antibody (light chain) fab 28 10090
47 4BH7 1 A ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65 ANTIGEN BINDING FRAGMENT 10090
48 2V7H 1 A, L MONOCLONAL ANTIBODY MONOCLONAL ANTIBODY AGAINST ALPHA-D-MANNOPYRANOSIDE FAB FRAGMENT LIGHT CHAIN 10090
49 2A6D 1 A, L Germline antibody 36-65 Fab light chain Fab 10090
50 5VCN 2 C, E LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8 10090
51 4PP1 2 C, E light chain of Fab fragment of mAb 5H8 10090
52 5T0Y 1 B, G, L 2A10 FAB fragment light chain 10090
53 2A6K 1 A, L Germline antibody 36-65 Fab light chain Fab 10090
54 4ZPV 2 B, L D12 Fab light chain 10090
55 1N6Q 5 L Monoclonal Antibody (Light Chain) FAB 28 10090
56 2HMI 5 C FAB FRAGMENT OF MONOCLONAL ANTIBODY 28 FAB FRAGMENT 10090
57 3KLH 3 C monoclonal antibody, heavy chain 10090
58 1YNT 1 A, C 4F11E12 Fab variable light chain region Fab fragment 10090
59 1R24 1 A, C PROTEIN (IGG3-KAPPA ANTIBODY (LIGHT CHAIN)) FAB 10090
60 4UIL 2 L FAB 314.1 FAB, LIGHT CHAIN, RESIDUES 1-213 10090
61 1N5Y 5 L monoclonal antibody (light chain) FAB 28 10090
62 1T03 5 L monoclonal antibody light chain Fab light chain domain 10090
63 2ZJS 4 L Fab56 (light chain) 10090
64 1HYS 5 C FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN 10090
65 4O02 3 L 17E6 light chain 10090
66 4RAU 1 A, D, G, J, M, P, S, V RTOFab light chain UNP residues 32-101 10090
67 1J5O 5 L ANTIBODY (LIGHT CHAIN) FAB28 10090
68 2VWE 2 C, J ANTI-VEGF-B MONOCLONAL ANTIBODY 10090