Sequence Similarity Clusters for the Entities in PDB 1FNS

Entity #1 | Chains: L
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 33339
95 % 9 54 647 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 10 68 473
70 % 472 2765 1
50 % 975 5625 1
40 % 1177 6382 1
30 % 1431 7934 1
Entity #2 | Chains: H
IMMUNOGLOBULIN NMC-4 IGG1 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59955
95 % 1 2 32741 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 12 5580
70 % 475 2728 2
50 % 976 5625 1
40 % 1178 6382 1
30 % 1432 7934 1
Entity #3 | Chains: A
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22521
95 % 2 14 4006 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.0
PDBFlex
90 % 2 14 4067
70 % 2 15 3750
50 % 2 15 3618
40 % 2 15 3482
30 % 2 15 3204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures