Sequence Similarity Clusters for the Entities in PDB 1FNG

Entity #1 | Chains: A,C
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 2067
95 % 1 15 1649
90 % 9 94 229
70 % 9 94 264
50 % 13 146 173
40 % 13 146 187
30 % 25 304 83
Entity #2 | Chains: B,D
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 1672
95 % 1 15 1639
90 % 1 15 1671
70 % 12 137 163
50 % 13 146 172
40 % 13 146 186
30 % 26 304 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.