Sequence Similarity Clusters for the Entities in PDB 1FNG

Entity #1 | Chains: A,C
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2106
95 % 1 15 1694 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 9 94 235
70 % 9 94 270
50 % 13 146 176
40 % 13 146 193
30 % 25 304 99
Entity #2 | Chains: B,D
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 1716
95 % 1 15 1685 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 15 1717
70 % 12 137 164
50 % 13 146 175
40 % 13 146 192
30 % 26 304 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.