Sequence Similarity Clusters for the Entities in PDB 1FNG

Entity #1 | Chains: A,C
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2262
95 % 1 15 1789 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 11 105 231
70 % 11 105 264
50 % 18 161 179
40 % 18 161 194
30 % 35 334 89
Entity #2 | Chains: B,D
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 1837
95 % 1 15 1780 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 15 1819
70 % 17 152 159
50 % 18 161 178
40 % 18 161 193
30 % 36 334 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures