Sequence Similarity Clusters for the Entities in PDB 1FNE

Entity #1 | Chains: A,C
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 2139
95 % 2 15 1720
90 % 12 97 232
70 % 12 97 264
50 % 16 149 176
40 % 16 149 189
30 % 31 310 94
Entity #2 | Chains: B,D
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 1747
95 % 2 15 1711
90 % 2 15 1746
70 % 15 140 161
50 % 16 149 175
40 % 16 149 188
30 % 32 310 94

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.