Sequence Similarity Clusters for the Entities in PDB 1FNE

Entity #1 | Chains: A,C
PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN) protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 1991
95 % 2 15 1596
90 % 10 92 228
70 % 10 92 262
50 % 14 142 175
40 % 14 142 189
30 % 27 296 95
Entity #2 | Chains: B,D
PROTEIN (MHC CLASS II I-EK, BETA CHAIN) protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 11 1606
95 % 2 15 1587
90 % 2 15 1621
70 % 13 133 163
50 % 14 142 174
40 % 14 142 188
30 % 28 296 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.