Sequence Similarity Clusters for the Entities in PDB 1FN4

Entity #1 | Chains: A,C
MONOCLONAL ANTIBODY AGAINST ACETYLCHOLINE RECEPTOR protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42026
95 % 1 1 31926 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 2 3 18444
70 % 1512 2416 1
50 % 3070 4892 1
40 % 3070 4892 1
30 % 3558 5759 1
Entity #2 | Chains: B,D
MONOCLONAL ANTIBODY AGAINST ACETYLCHOLINE RECEPTOR protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41299
95 % 1 1 31520 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 30267
70 % 1482 2366 2
50 % 3071 4892 1
40 % 3071 4892 1
30 % 3559 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures