Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52774
95 % 1 2 37548
90 % 1 2 35831
70 % 11 20 3158
50 % 12 22 2882
40 % 12 22 2880
30 % 12 27 414
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31911
95 % 1 2 27616
90 % 1 2 26577
70 % 12 22 2936
50 % 12 22 2967
40 % 12 22 2888
30 % 62 197 181
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45022
95 % 1 2 37547
90 % 1 2 35830
70 % 11 22 2481
50 % 12 24 2280
40 % 16 36 372
30 % 66 210 164
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5665
95 % 11 17 3934 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3896
70 % 11 18 3815
50 % 11 18 3715
40 % 11 18 3534
30 % 11 18 3242

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 4 4 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 4 4 Coat protein VP4 12110
3 4IV1 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
4 5NE4 4 4 O PanAsia VP4 12110
5 1BBT 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
6 5D8A 4 D VP4 12110
7 1FOD 4 4 FOOT AND MOUTH DISEASE VIRUS 12110
8 1ZBE 4 4 Coat protein VP4 12110
9 4IV3 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
10 2WZR 4 4 POLYPROTEIN RESIDUES 200-284 12110
11 1FMD 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
12 5DDJ 4 4 Genome polyprotein 12110
13 5NET 4 4 O1 Manisa VP4 12110
14 5NEU 4 4 O1 Manisa VP4 12110
15 5NED 4 D O PanAsia VP4 12110
16 5NEJ 4 4 O1 Manisa VP1 12110
17 5AC9 4 4 VP4 FOOT-AND-MOUTH DISEASE VIRUS 12110