Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61509
95 % 1 2 31597
90 % 1 2 30223
70 % 11 20 3191
50 % 12 22 2810
40 % 12 22 2764
30 % 12 22 2590
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40668
95 % 1 2 31092
90 % 1 2 29866
70 % 12 22 2854
50 % 12 22 2811
40 % 12 22 2765
30 % 61 194 165
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40542
95 % 1 2 31032
90 % 1 2 29826
70 % 11 22 2338
50 % 12 24 2132
40 % 15 36 330
30 % 65 209 147
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16132
95 % 11 18 3657 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3712
70 % 11 18 3658
50 % 11 18 3548
40 % 11 18 3424
30 % 12 25 670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 4 4 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 4 4 Coat protein VP4 12110
3 4IV1 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
4 5NE4 4 4 O PanAsia VP4 12110
5 1BBT 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
6 5D8A 4 D VP4 12110
7 1FOD 4 4 FOOT AND MOUTH DISEASE VIRUS 12110
8 1ZBE 4 4 Coat protein VP4 12110
9 4IV3 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
10 2WZR 4 4 POLYPROTEIN RESIDUES 200-284 12110
11 1FMD 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
12 5DDJ 4 4 Genome polyprotein 12110
13 5NET 4 4 O1 Manisa VP4 12110
14 5NEU 4 4 O1 Manisa VP4 12110
15 5NED 4 D O PanAsia VP4 12110
16 5NEJ 4 4 O1 Manisa VP1 12110
17 5AC9 4 4 VP4 FOOT-AND-MOUTH DISEASE VIRUS 12110
18 5ACA 4 4 VP4 12110