Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54781
95 % 1 2 38983
90 % 1 2 37158
70 % 11 20 3302
50 % 12 22 2996
40 % 12 22 2993
30 % 12 27 430
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31633
95 % 1 2 32431
90 % 1 2 31032
70 % 12 22 3069
50 % 12 22 3089
40 % 12 22 3002
30 % 63 204 182
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46789
95 % 1 2 38982
90 % 1 2 37157
70 % 11 22 2578
50 % 12 24 2374
40 % 16 37 401
30 % 67 218 165
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5940
95 % 11 17 4118 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4076
70 % 11 18 3985
50 % 11 18 3863
40 % 11 18 3674
30 % 11 18 3348

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 4 4 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 4 4 Coat protein VP4 12110
3 4IV1 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
4 5NE4 4 4 O PanAsia VP4 12110
5 1BBT 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
6 5D8A 4 D VP4 12110
7 1FOD 4 4 FOOT AND MOUTH DISEASE VIRUS 12110
8 1ZBE 4 4 Coat protein VP4 12110
9 4IV3 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
10 2WZR 4 4 POLYPROTEIN RESIDUES 200-284 12110
11 1FMD 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
12 5DDJ 4 4 Genome polyprotein 12110
13 5NET 4 4 O1 Manisa VP4 12110
14 5NEU 4 4 O1 Manisa VP4 12110
15 5NED 4 D O PanAsia VP4 12110
16 5NEJ 4 4 O1 Manisa VP1 12110
17 5AC9 4 4 VP4 FOOT-AND-MOUTH DISEASE VIRUS 12110