Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53686
95 % 1 2 38172
90 % 1 2 36404
70 % 11 20 3221
50 % 12 22 2931
40 % 12 22 2936
30 % 12 27 423
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32545
95 % 1 2 28123
90 % 1 2 27040
70 % 12 22 3000
50 % 12 22 3024
40 % 12 22 2946
30 % 62 197 184
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45837
95 % 1 2 38171
90 % 1 2 36403
70 % 11 22 2532
50 % 12 24 2328
40 % 16 36 392
30 % 66 210 163
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5787
95 % 11 17 4017 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3978
70 % 11 18 3891
50 % 11 18 3779
40 % 11 18 3601
30 % 11 18 3302

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 4 4 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 4 4 Coat protein VP4 12110
3 4IV1 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
4 5NE4 4 4 O PanAsia VP4 12110
5 1BBT 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
6 5D8A 4 D VP4 12110
7 1FOD 4 4 FOOT AND MOUTH DISEASE VIRUS 12110
8 1ZBE 4 4 Coat protein VP4 12110
9 4IV3 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
10 2WZR 4 4 POLYPROTEIN RESIDUES 200-284 12110
11 1FMD 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
12 5DDJ 4 4 Genome polyprotein 12110
13 5NET 4 4 O1 Manisa VP4 12110
14 5NEU 4 4 O1 Manisa VP4 12110
15 5NED 4 D O PanAsia VP4 12110
16 5NEJ 4 4 O1 Manisa VP1 12110
17 5AC9 4 4 VP4 FOOT-AND-MOUTH DISEASE VIRUS 12110