Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61509
95 % 1 2 31597
90 % 1 2 30223
70 % 11 20 3191
50 % 12 22 2810
40 % 12 22 2764
30 % 12 22 2590
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40668
95 % 1 2 31092
90 % 1 2 29866
70 % 12 22 2854
50 % 12 22 2811
40 % 12 22 2765
30 % 61 194 165
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40542
95 % 1 2 31032
90 % 1 2 29826
70 % 11 22 2338
50 % 12 24 2132
40 % 15 36 330
30 % 65 209 147
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16132
95 % 11 18 3657 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3712
70 % 11 18 3658
50 % 11 18 3548
40 % 11 18 3424
30 % 12 25 670

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4IV1 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
2 5D8A 4 D VP4 12110
3 1FOD 4 4 FOOT AND MOUTH DISEASE VIRUS 12110
4 4IV3 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
5 1FMD 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110