Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52702
95 % 1 2 37492
90 % 1 2 35775
70 % 11 20 3157
50 % 12 22 2881
40 % 12 22 2877
30 % 12 27 413
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31854
95 % 1 2 27567
90 % 1 2 26526
70 % 12 22 2934
50 % 12 22 2965
40 % 12 22 2885
30 % 62 197 180
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 44954
95 % 1 2 37491
90 % 1 2 35774
70 % 11 22 2481
50 % 12 24 2278
40 % 16 36 373
30 % 66 210 164
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5660
95 % 11 17 3933 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3895
70 % 11 18 3814
50 % 11 18 3713
40 % 11 18 3528
30 % 11 18 3239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 4 4 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 4 4 Coat protein VP4 12110
3 4IV1 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
4 5NE4 4 4 O PanAsia VP4 12110
5 1BBT 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
6 5D8A 4 D VP4 12110
7 1FOD 4 4 FOOT AND MOUTH DISEASE VIRUS 12110
8 1ZBE 4 4 Coat protein VP4 12110
9 4IV3 4 D Capsid protein VP4 UNP RESIDUES 201-286 12110
10 2WZR 4 4 POLYPROTEIN RESIDUES 200-284 12110
11 1FMD 4 4 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) 12110
12 5NED 4 D O PanAsia VP4 12110