Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61221
95 % 1 2 31433
90 % 1 2 30084
70 % 11 20 3168
50 % 12 22 2788
40 % 12 22 2744
30 % 12 22 2573
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40471
95 % 1 2 30934
90 % 1 2 29726
70 % 12 22 2833
50 % 12 22 2789
40 % 12 22 2745
30 % 61 194 165
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40346
95 % 1 2 30875
90 % 1 2 29687
70 % 11 22 2318
50 % 12 24 2115
40 % 15 36 321
30 % 65 209 148
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16061
95 % 11 18 3635 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3689
70 % 11 18 3637
50 % 11 18 3533
40 % 11 18 3411
30 % 12 25 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
2 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110