Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56258
95 % 1 2 40046
90 % 1 2 38144
70 % 11 20 3427
50 % 12 22 3085
40 % 12 22 3070
30 % 12 27 447
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32584
95 % 1 2 33321
90 % 1 2 31856
70 % 12 22 3169
50 % 12 22 3178
40 % 12 22 3078
30 % 62 228 177
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48113
95 % 1 2 40045
90 % 1 2 38143
70 % 11 22 2670
50 % 12 24 2447
40 % 16 41 407
30 % 66 244 162
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6152
95 % 11 17 4279 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4214
70 % 11 18 4113
50 % 11 18 3960
40 % 11 18 3759
30 % 11 18 3433

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
2 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110