Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62449
95 % 1 2 32067
90 % 1 2 30662
70 % 11 20 3255
50 % 12 22 2860
40 % 12 22 2809
30 % 12 22 2635
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41356
95 % 1 2 31557
90 % 1 2 30304
70 % 12 22 2905
50 % 12 22 2861
40 % 12 22 2810
30 % 62 195 168
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41228
95 % 1 2 31495
90 % 1 2 30262
70 % 11 22 2396
50 % 12 24 2186
40 % 16 36 340
30 % 66 210 151
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16448
95 % 11 18 3736 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3789
70 % 11 18 3735
50 % 11 18 3619
40 % 11 18 3486
30 % 12 25 678

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 3 3 Coat protein VP3 12110
3 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
4 5NE4 3 3 Polyprotein 12110
5 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
6 5D8A 3 C VP3 12110
7 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
8 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
9 1ZBE 3 3 Coat protein VP3 12110
10 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
11 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
12 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
13 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
14 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
15 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
16 5NER 3 3 O PanAsia VP3 12110
17 5NET 3 3 O1 Manisa VP3 12110
18 5NEU 3 3 Capsid protein 12110
19 5NED 3 C O PanAsia VP3 12110
20 5NEJ 3 3 O1 Manisa VP3 12110
21 5NEM 3 3 O PanAsia VP3 12110
22 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
23 5ACA 3 3 VP3 12110
24 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110