Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54857
95 % 1 2 39027
90 % 1 2 37197
70 % 11 20 3311
50 % 12 22 3000
40 % 12 22 2997
30 % 12 27 431
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31696
95 % 1 2 32485
90 % 1 2 31077
70 % 12 22 3077
50 % 12 22 3095
40 % 12 22 3006
30 % 63 204 183
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46854
95 % 1 2 39026
90 % 1 2 37196
70 % 11 22 2583
50 % 12 24 2376
40 % 16 37 401
30 % 67 218 165
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5955
95 % 11 17 4127 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4086
70 % 11 18 3996
50 % 11 18 3872
40 % 11 18 3683
30 % 11 18 3360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 3 3 Coat protein VP3 12110
3 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
4 5NE4 3 3 Polyprotein 12110
5 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
6 5D8A 3 C VP3 12110
7 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
8 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
9 1ZBE 3 3 Coat protein VP3 12110
10 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
11 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
12 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
13 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
14 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
15 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
16 5NER 3 3 O PanAsia VP3 12110
17 5NET 3 3 O1 Manisa VP3 12110
18 5NEU 3 3 Capsid protein 12110
19 5NED 3 C O PanAsia VP3 12110
20 5NEJ 3 3 O1 Manisa VP3 12110
21 5NEM 3 3 O PanAsia VP3 12110
22 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
23 5ACA 3 3 VP3 12110
24 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110