Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61156
95 % 1 2 31400
90 % 1 2 30053
70 % 11 20 3167
50 % 12 22 2787
40 % 12 22 2742
30 % 12 22 2572
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40436
95 % 1 2 30903
90 % 1 2 29696
70 % 12 22 2832
50 % 12 22 2788
40 % 12 22 2743
30 % 61 194 165
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40311
95 % 1 2 30844
90 % 1 2 29657
70 % 11 22 2316
50 % 12 24 2115
40 % 15 36 319
30 % 65 209 148
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16048
95 % 11 18 3632 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3686
70 % 11 18 3635
50 % 11 18 3530
40 % 11 18 3409
30 % 12 25 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 3 3 Coat protein VP3 12110
3 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
4 5NE4 3 3 Polyprotein 12110
5 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
6 5D8A 3 C VP3 12110
7 5CFC 2 B Genome polyprotein, VP3 residues 415-646 1821750
8 3CJI 2 B Polyprotein sequence database residues 151-434 390157
9 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
10 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
11 1ZBE 3 3 Coat protein VP3 12110
12 2MEV 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP3) 1821749
13 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
14 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
15 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
16 2WS9 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
17 1TME 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
18 2XBO 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
19 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
20 2WFF 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
21 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
22 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
23 5NER 3 3 O PanAsia VP3 12110
24 5NET 3 3 O1 Manisa VP3 12110
25 5NEU 3 3 Capsid protein 12110
26 5NED 3 C O PanAsia VP3 12110
27 5NEJ 3 3 O1 Manisa VP3 12110
28 5NEM 3 3 O PanAsia VP3 12110
29 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
30 5ACA 3 3 VP3 12110
31 5CFD 2 B VP3 1821750
32 4CTF 3 D0, D1, D2, D3, D4, D5, D6, D7, D8, D9, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, Da, Db, Dc, Dd, De, Df, Dg, Dh, Di, Dj, Dk, Dl, Dm, Dn, Do, Dp, Dq, Dr, Ds, EA, EB, EC, ED, EE P1 RESIDUES 311-536 47000
33 4CTG 3 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx, DA, DB P1 RESIDUES 311-536 47000
34 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110
35 1TMF 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
36 1MEC 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) 1821749