Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53016
95 % 1 2 37726
90 % 1 2 35990
70 % 11 20 3168
50 % 12 22 2890
40 % 12 22 2895
30 % 12 27 415
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32059
95 % 1 2 27738
90 % 1 2 26683
70 % 12 22 2944
50 % 12 22 2978
40 % 12 22 2902
30 % 62 197 181
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45230
95 % 1 2 37725
90 % 1 2 35989
70 % 11 22 2491
50 % 12 24 2291
40 % 16 36 380
30 % 66 210 162
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 5688
95 % 11 17 3950 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3914
70 % 11 18 3831
50 % 11 18 3729
40 % 11 18 3547
30 % 11 18 3251

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 3 3 Coat protein VP3 12110
3 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
4 5NE4 3 3 Polyprotein 12110
5 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
6 5D8A 3 C VP3 12110
7 5CFD 2 B VP3 1821750
8 5CFC 2 B VP3 residues 415-646 1821750
9 3CJI 2 B Polyprotein sequence database residues 151-434 390157
10 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
11 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
12 1ZBE 3 3 Coat protein VP3 12110
13 2MEV 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP3) 1821749
14 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
15 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
16 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
17 2WS9 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
18 1TME 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
19 2XBO 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
20 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
21 2WFF 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
22 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
23 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
24 5NER 3 3 O PanAsia VP3 12110
25 5NET 3 3 O1 Manisa VP3 12110
26 5NEU 3 3 Capsid protein 12110
27 5NED 3 C O PanAsia VP3 12110
28 5NEJ 3 3 O1 Manisa VP3 12110
29 5NEM 3 3 O PanAsia VP3 12110
30 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
31 5ACA 3 3 VP3 12110
32 4CTF 3 D0, D1, D2, D3, D4, D5, D6, D7, D8, D9, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, Da, Db, Dc, Dd, De, Df, Dg, Dh, Di, Dj, Dk, Dl, Dm, Dn, Do, Dp, Dq, Dr, Ds, EA, EB, EC, ED, EE P1 RESIDUES 311-536 47000
33 4CTG 3 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx, DA, DB P1 RESIDUES 311-536 47000
34 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110
35 1TMF 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
36 1MEC 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) 1821749