Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61879
95 % 1 2 31782
90 % 1 2 30403
70 % 11 20 3214
50 % 12 22 2827
40 % 12 22 2779
30 % 12 22 2605
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40941
95 % 1 2 31277
90 % 1 2 30046
70 % 12 22 2865
50 % 12 22 2828
40 % 12 22 2780
30 % 61 195 166
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 40814
95 % 1 2 31216
90 % 1 2 30005
70 % 11 22 2358
50 % 12 24 2149
40 % 15 36 332
30 % 65 210 149
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 16269
95 % 11 18 3686 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 3739
70 % 11 18 3684
50 % 11 18 3572
40 % 11 18 3443
30 % 12 25 672

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 3 3 Coat protein VP3 12110
3 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
4 5NE4 3 3 Polyprotein 12110
5 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
6 5D8A 3 C VP3 12110
7 5CFC 2 B Genome polyprotein, VP3 residues 415-646 1821750
8 3CJI 2 B Polyprotein sequence database residues 151-434 390157
9 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
10 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
11 1ZBE 3 3 Coat protein VP3 12110
12 2MEV 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP3) 1821749
13 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
14 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
15 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
16 2WS9 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
17 1TME 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
18 2XBO 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
19 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
20 2WFF 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
21 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
22 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
23 5NER 3 3 O PanAsia VP3 12110
24 5NET 3 3 O1 Manisa VP3 12110
25 5NEU 3 3 Capsid protein 12110
26 5NED 3 C O PanAsia VP3 12110
27 5NEJ 3 3 O1 Manisa VP3 12110
28 5NEM 3 3 O PanAsia VP3 12110
29 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
30 5ACA 3 3 VP3 12110
31 5CFD 2 B VP3 1821750
32 4CTF 3 D0, D1, D2, D3, D4, D5, D6, D7, D8, D9, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, Da, Db, Dc, Dd, De, Df, Dg, Dh, Di, Dj, Dk, Dl, Dm, Dn, Do, Dp, Dq, Dr, Ds, EA, EB, EC, ED, EE P1 RESIDUES 311-536 47000
33 4CTG 3 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx, DA, DB P1 RESIDUES 311-536 47000
34 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110
35 1TMF 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
36 1MEC 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) 1821749