Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55283
95 % 1 2 39324
90 % 1 2 37471
70 % 11 20 3349
50 % 12 22 3026
40 % 12 22 3019
30 % 12 27 435
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31985
95 % 1 2 32725
90 % 1 2 31292
70 % 12 22 3107
50 % 12 22 3119
40 % 12 22 3028
30 % 62 221 175
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47241
95 % 1 2 39323
90 % 1 2 37470
70 % 11 22 2617
50 % 12 24 2404
40 % 16 37 408
30 % 66 237 161
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6029
95 % 11 17 4191 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4135
70 % 11 18 4032
50 % 11 18 3897
40 % 11 18 3704
30 % 11 18 3376

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
2 1ZBA 3 3 Coat protein VP3 12110
3 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
4 5NE4 3 3 Polyprotein 12110
5 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
6 5D8A 3 C VP3 12110
7 5CFD 2 B VP3 1821750
8 5CFC 2 B VP3 residues 415-646 1821750
9 3CJI 2 B Polyprotein sequence database residues 151-434 390157
10 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
11 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
12 1ZBE 3 3 Coat protein VP3 12110
13 2MEV 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP3) 1821749
14 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
15 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
16 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
17 2WS9 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
18 1TME 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
19 2XBO 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
20 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
21 2WFF 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
22 6CX1 4 B Capsid protein VP3 residues 435-672 390157
23 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
24 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
25 5NER 3 3 O PanAsia VP3 12110
26 5NET 3 3 O1 Manisa VP3 12110
27 5NEU 3 3 Capsid protein 12110
28 5NED 3 C O PanAsia VP3 12110
29 5NEJ 3 3 O1 Manisa VP3 12110
30 5NEM 3 3 O PanAsia VP3 12110
31 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
32 5ACA 3 3 VP3 12110
33 4CTF 3 D0, D1, D2, D3, D4, D5, D6, D7, D8, D9, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, Da, Db, Dc, Dd, De, Df, Dg, Dh, Di, Dj, Dk, Dl, Dm, Dn, Do, Dp, Dq, Dr, Ds, EA, EB, EC, ED, EE P1 RESIDUES 311-536 47000
34 4CTG 3 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx, DA, DB P1 RESIDUES 311-536 47000
35 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110
36 1TMF 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
37 1MEC 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) 1821749