Sequence Similarity Clusters for the Entities in PDB 1FMD

Entity #1 | Chains: 1
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP1) protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55283
95 % 1 2 39324
90 % 1 2 37471
70 % 11 20 3349
50 % 12 22 3026
40 % 12 22 3019
30 % 12 27 435
Entity #2 | Chains: 2
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP2) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31985
95 % 1 2 32725
90 % 1 2 31292
70 % 12 22 3107
50 % 12 22 3119
40 % 12 22 3028
30 % 62 221 175
Entity #3 | Chains: 3
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47241
95 % 1 2 39323
90 % 1 2 37470
70 % 11 22 2617
50 % 12 24 2404
40 % 16 37 408
30 % 66 237 161
Entity #4 | Chains: 4
FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4) protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 6029
95 % 11 17 4191 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 11 18 4135
70 % 11 18 4032
50 % 11 18 3897
40 % 11 18 3704
30 % 11 18 3376

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Q4W 3 3 Coxsackievirus capsid protein VP3 138950
2 4Q4X 3 3 Coxsackievirus capsid protein VP3 138950
3 4Q4Y 3 3 Coxsackievirus capsid protein VP3 138950
4 1QQP 3 3 PROTEIN (GENOME POLYPROTEIN) STRAIN BFS, 1860 12110
5 1ZBA 3 3 Coat protein VP3 12110
6 4IV1 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
7 5C8C 3 C VP3 138948
8 1AYM 3 3 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
9 4WM8 3 C VP3 138951
10 5NE4 3 3 Polyprotein 12110
11 5BNP 3 C Capsid protein VP3 UNP residues 318-564 138951
12 3VBH 3 C Genome Polyprotein, vapsid protein VP3 138948
13 1BBT 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
14 1PVC 4 3 POLIOVIRUS TYPE 3, SABIN STRAIN P3/SABIN P3/LEON/12A(1)B 138950
15 5BNO 3 C Capsid protein VP3 UNP residues 318-564 138951
16 5D8A 3 C VP3 12110
17 1FPN 3 3 COAT PROTEIN VP3 147711
18 1ND2 3 C coat protein VP3 147711
19 4WM7 3 C VP3 138951
20 1HXS 3 3 GENOME POLYPROTEIN, COAT PROTEIN VP3 RESIDUES 341-577 138950
21 5BNN 3 C Capsid protein VP3 UNP residues 318-564 138951
22 5CFD 2 B VP3 1821750
23 1NCQ 3 C COAT PROTEIN VP3 147712
24 5CFC 2 B VP3 residues 415-646 1821750
25 3CJI 2 B Polyprotein sequence database residues 151-434 390157
26 1FOD 3 3 FOOT AND MOUTH DISEASE VIRUS 12110
27 1D4M 3 3 PROTEIN (COXSACKIEVIRUS A9) VP3 138949
28 4RHV 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
29 4GH4 3 C capsid protein VP3 UNP residues 219-439 12110
30 1EAH 3 3 POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 138950
31 4Q4V 3 3 Coxsackievirus capsid protein VP3 138950
32 1K5M 3 C COAT PROTEIN VP3 (P1C) 147712
33 1QJU 3 3 PROTEIN VP3 RESIDUES 331-568 147711
34 3VBF 3 C Genome Polyprotein, capsid protein VP3 STRAIN FUYANG, ANHUI. P.R.C/17.08/1 138948
35 2PLV 3 3 HUMAN POLIOVIRUS TYPE 1 (SUBUNIT VP3) 138950
36 5AOO 3 C VP3 72149
37 4PDW 3 C Genome polyprotein resdiues 332-657 147712 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.29 | Details 3.6.1.15 | Details
38 4CDQ 3 C VP3 138948
39 3ZFE 3 C VP3 VIRION OF HUMAN ENTEROVIRUS 71 138948
40 1QJX 3 3 PROTEIN VP3 RESIDUES 331-568 147711
41 1QJY 3 3 PROTEIN VP3 RESIDUES 331-568 147711
42 1NCR 3 C coat protein VP3 147711
43 3VBO 3 C Genome Polyprotein, capsid protein VP3 138948
44 1ZBE 3 3 Coat protein VP3 12110
45 1AYN 3 3 HUMAN RHINOVIRUS 16 COAT PROTEIN 169066
46 1C8M 3 3 HUMAN RHINOVIRUS 16 COAT PROTEIN RESIDUES 331-568 147711
47 2MEV 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP3) 1821749
48 1AR7 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
49 1ND3 3 C coat protein VP3 147711
50 4IV3 3 C Capsid protein VP3 UNP RESIDUES 505-725 12110
51 1BEV 3 3 BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4 12064
52 4JGY 3 C Polyprotein, capsid protein VP3 STRAIN NINGBO.CHN/028-2/2009 138948
53 1AL2 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
54 1PO1 4 3 POLIOVIRUS TYPE 1 MAHONEY 138950
55 2WZR 3 3 POLYPROTEIN RESIDUES 504-724 12110
56 1AR9 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
57 4RQP 2 B, F, J, N, R Capsid protein VP3 138948
58 5C4W 3 C VP3 138948
59 1H8T 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
60 1PO2 4 3 POLIOVIRUS TYPE 1 MAHONEY 138950
61 1ASJ 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
62 1Z7S 3 3 Human coxsackievirus A21 Viral Protein 3 138950
63 1OOP 3 C Coat protein VP3 138949
64 4CDX 3 C VP3 138948
65 4RR3 2 B, F, J, N, R Capsid protein VP3 138948
66 1FMD 3 3 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP3) 12110
67 3VDD 3 C Protein VP3 UNP residues 331-567 147711
68 1NA1 3 C Coat protein VP3 147712
69 5C9A 3 C VP3 138948
70 4CDU 3 C VP3 138948
71 1VBB 4 3 POLIOVIRUS TYPE 3 138950
72 1POV 3 3 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1) 138950
73 1AR6 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
74 1AR8 4 3 P1/MAHONEY POLIOVIRUS VIRUS PROTOMER 138950
75 4N53 3 C Capsid protein VP3 138948
76 4CDW 3 C VP3 138948
77 4CEY 3 C VP3 138948
78 1VBC 4 3 POLIOVIRUS TYPE 3 138950
79 3TN9 3 3 Protein VP3 147711
80 3ZFG 3 C VP3 VIRION OF HUMAN ENTEROVIRUS 71 138948
81 1VBE 4 3 POLIOVIRUS TYPE 3 138950
82 4CEW 3 C VP3 138948
83 3VBS 3 C Genome Polyprotein, capsid protein VP3 138948
84 5ABJ 3 C VP3 UNP RESIDUES 324-565 138948
85 2WS9 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
86 1VBD 4 3 POLIOVIRUS TYPE 1 MAHONEY P1/MAHONEY 138950
87 1TME 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
88 3ZFF 3 C VP3 138948
89 1RHI 3 3 HUMAN RHINOVIRUS 3 COAT PROTEIN 147712
90 1VBA 4 3 POLIOVIRUS TYPE 3 138950
91 4JGZ 3 C Polyprotein, capsid protein VP3 STRAIN NINGBO.CHN/028-2/2009 138948
92 1MQT 3 C Polyprotein Capsid Protein SVDV COAT PROTEIN VP3 138949
93 1RVF 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN 147712
94 4GB3 3 3 coat protein 3 UNP residues 333-570 138949
95 2X5I 3 C VP3 138949
96 1PIV 4 3 POLIOVIRUS TYPE 3 (SUBUNIT VP3) 138950
97 1COV 3 3 COXSACKIEVIRUS COAT PROTEIN 138949
98 1R1A 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
99 1EV1 3 3 ECHOVIRUS 1 VP1, VP2, VP3, VP4 138949
100 4N43 3 C Capsid protein VP3 EV71 capsid protein VP3 138948
101 3VBR 3 C Genome Polyprotein, capsid protein VP3 138948
102 2XBO 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
103 4YVS 2 B, E, H, K, N Capsid protein VP3 138948
104 1V9U 3 3 Coat protein VP3 147711
105 4RS5 1 B, E, H, K, N Capsid protein VP3 138948
106 4GMP 3 3 capsid protein VP3 UNP residues 324-565 138948
107 4AED 3 C VP3 138948
108 3VBU 3 C Genome Polyprotein, capsid protein VP3 138948
109 4YVW 2 B, F, H, K, N Capsid protein VP3 138948
110 5DDJ 3 3 Foot and mouth disease virus, VP3 12110
111 3DPR 3 C Protein VP3 147711
112 4L3B 3 C Protein VP3 UNP residues 331-567 147711
113 2WFF 3 3 P1 CAPSID PROTEIN VP3, RESIDUES 311-536 47000
114 6MZI 2 B viral protein 3 UNP residues 318-564 138951
115 6I2K 3 C Polyprotein 138948
116 6IIO 3 C VP3 138948
117 6IIJ 3 C VP3 138948
118 6AJ7 5 C Capsid protein VP3 138951
119 6AJ9 7 C Capsid protein VP3 138951
120 6AJ2 3 C Capsid protein VP3 138951
121 6AJ3 3 C Capsid protein VP3 138951
122 6AJ0 3 C Capsid protein VP3 138951
123 6ACY 3 C VP3 138948
124 6ACZ 3 C VP3 138948
125 6AD0 5 C VP3 138948
126 6AD1 3 C VP3 138948
127 6ACU 3 C VP3 138948
128 6ACW 3 C VP3 138948
129 6CX1 4 B Capsid protein VP3 residues 435-672 390157
130 6CSA 2 B viral protein 3 UNP residues 318-564 138951
131 6CSG 2 B viral protein 3 UNP residues 318-564 138951
132 6CSH 2 B viral protein 3 UNP residues 318-564 138951
133 6CRP 2 B viral protein 3 UNP residues 318-564 138951
134 6CRR 2 B viral protein 3 UNP residues 318-564 138951
135 6CRS 2 B viral protein 3 UNP residues 318-564 138951
136 6CRU 2 B viral protein 3 UNP residues 318-564 138951
137 6CS3 2 B viral protein 3 UNP residues 318-564 138951
138 6CS4 2 B viral protein 3 UNP residues 318-564 138951
139 6CS5 2 B viral protein 3 UNP residues 318-564 138951
140 6CS6 2 B viral protein 3 UNP residues 318-564 138951
141 5YHQ 2 C Capsid protein VP3 UNP RESIDUES 326-565 138948
142 6EIT 3 3 VP3 138950
143 5OYI 3 3, C, F, I, L Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
144 5OWX 3 3 Genome polyprotein 12110 2.7.7.48 | Details 3.4.22.28 | Details 3.4.22.46 | Details 3.6.1.15 | Details
145 5OSN 3 C Capsid protein 12064
146 5XS4 3 C Genome polyprotein UNP residues 326-565 138948
147 5XS5 3 C Genome polyprotein UNP residues 326-565 138948
148 5XS7 5 C Genome polyprotein UNP residues 326-565 138948
149 5W3L 2 B viral protein 3 UNP residues 332-567 147712
150 5W3M 4 B viral protein 3 UNP residues 332-567 147712
151 5W3O 4 B viral protein 3 UNP residues 332-567 147712
152 5W3E 4 B viral protein 3 UNP residues 332-567 147712
153 5O5P 3 3 Capsid proteins, VP3 138950
154 5O5B 3 3 Capsid proteins 138950
155 5NER 3 3 O PanAsia VP3 12110
156 5NET 3 3 O1 Manisa VP3 12110
157 5NEU 3 3 Capsid protein 12110
158 5NED 3 C O PanAsia VP3 12110
159 5NEJ 3 3 O1 Manisa VP3 12110
160 5NEM 3 3 O PanAsia VP3 12110
161 5TSL 1 C coxsackievirus A16 138948
162 5LVC 3 c VP3 VP3 72149
163 5KWL 3 3 VP3 UNP residues 342-571 138950
164 5KTZ 3 3 Genome polyprotein UNP residues 342-572 138950
165 5KU0 3 3 VP3 UNP residues 342-571 138950
166 5KU2 3 3 VP3 UNP residues 342-571 138950
167 5GKA 3 C Genome polyprotein 72149
168 5K0U 2 B Capsid protein VP3 UNP residues 333-567 463676
169 5JZG 2 B Capsid protein VP3 UNP residues 333-567 463676
170 3JD7 3 3 Capsid protein VP3 UNP residues 333-570 138949
171 3JBC 3 3 Capsid protein VP3 UNP residues 342-578 138950
172 3JBD 3 3 Capsid protein VP3 UNP residues 342-578 138950
173 3JBE 3 3 Capsid protein VP3 UNP residues 342-578 138950
174 3JBF 3 3 Capsid protein VP3 UNP residues 342-578 138950
175 3JBG 3 3 Capsid protein VP3 UNP residues 342-578 138950
176 5AC9 3 3 VP2 FMDV O1 MANISA SEROTYPE WITH A MUTATION AT VP2 S93Y 12110
177 5ACA 3 3 VP3 12110
178 3J9F 3 3 Protein VP3 UNP residues 342-579 138950
179 3J91 3 3 VP3 UNP residues 324-565 138948
180 3J8F 3 3 Capsid protein VP3 UNP residues 342-579 138950
181 4CTF 3 D0, D1, D2, D3, D4, D5, D6, D7, D8, D9, DA, DB, DC, DD, DE, DF, DG, DH, DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX, DY, DZ, Da, Db, Dc, Dd, De, Df, Dg, Dh, Di, Dj, Dk, Dl, Dm, Dn, Do, Dp, Dq, Dr, Ds, EA, EB, EC, ED, EE P1 RESIDUES 311-536 47000
182 4CTG 3 C0, C1, C2, C3, C4, C5, C6, C7, C8, C9, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Cc, Cd, Ce, Cf, Cg, Ch, Ci, Cj, Ck, Cl, Cm, Cn, Co, Cp, Cq, Cr, Cs, Ct, Cu, Cv, Cw, Cx, DA, DB P1 RESIDUES 311-536 47000
183 4C0U 3 C VP3 138948
184 4C0Y 3 C VP3 138948
185 4C10 5 C VP2 138948
186 3J48 3 3 Protein VP3 UNP residues 342-579 138950
187 3J3O 6 3 Protein VP3 UNP residues 342-579 138950
188 3J3P 5 3 Protein VP3 UNP residues 342-579 138950
189 3J2J 2 B Protein VP3 UNP residues 331-568 138949
190 3J22 3 C capsid protein VP3 UNP residues 324-562 138948
191 3J23 3 C capsid protein VP3 UNP residues 324-562 138948
192 3IYP 2 B Polyprotein 138949
193 3IYB 3 3 Precursor polyprotein 138950
194 3IYC 3 3 Precursor polyprotein 138950
195 3EPC 5 3 Protein VP3 138950
196 3EPD 6 3 protein VP3 138950
197 3EPF 5 3 Protein VP3 138950
198 2C8I 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
199 1Z7Z 3 3 human coxsackievirus A21 Viral Protein 3 residues 3043-3234 138950
200 1UPN 3 C ECHOVIRUS 11 COAT PROTEIN VP3 138949
201 1NN8 4 3 coat protein VP3 138950
202 1M11 4 3 COAT PROTEIN VP3 138949
203 1JEW 4 3 COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3 Residues 333-570 138949
204 1DGI 4 3 VP3 138950
205 1D3E 4 3 PROTEIN (RHINOVIRUS 16 COAT PROTEIN VP3) 169066
206 1D3I 4 3 PROTEIN (RHINOVIRUS 14 COAT PROTEIN VP3) 169066
207 1QGC 3 3 PROTEIN (VIRUS CAPSID PROTEIN VP3) 12110
208 1VRH 3 3 RHINOVIRUS 14 147712
209 1RUC 3 3 RHINOVIRUS 14 147712
210 1RUD 3 3 RHINOVIRUS 14 147712
211 1RUE 3 3 RHINOVIRUS 14 147712
212 1RUF 3 3 RHINOVIRUS 14 147712
213 1RUG 3 3 RHINOVIRUS 14 147712
214 1RUH 3 3 RHINOVIRUS 14 147712
215 1RUI 3 3 RHINOVIRUS 14 147712
216 1RUJ 3 3 RHINOVIRUS 14 147712
217 1HRV 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
218 2HWB 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
219 2HWC 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
220 2HWD 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
221 2HWE 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
222 2HWF 3 3 HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3) 147711
223 1HRI 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
224 1TMF 3 3 THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) 1821750
225 1MEC 3 3 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) 1821749
226 1R09 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
227 1R08 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
228 1RMU 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
229 2R04 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
230 2R06 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
231 2R07 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
232 2RM2 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
233 2RMU 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
234 2RR1 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
235 2RS1 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
236 2RS3 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712
237 2RS5 3 3 HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3) 147712